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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKINFSLLDEPMEVNLGTVLVIEDVSVFAQLVKEFYQYDEQSNLTIFDSKIRSIRSSELLLITDILGYDINTSQVLKLLH
TDIVSQLNDKPEVRSEIDSLVSLITDIIMAECIENELDIEYDEITLLELIKALGVRIETKSCTVFEKIFEILQIFKYLVK
KRILVFVNSLSYFSKDEIYQILEYTKLSQADVLFLEPRQIEGIQQFILDKDYILMPYN

The query sequence (length=218) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qxf:B 219 218 1.0000 0.9954 1.0000 2.13e-154 6qxf:A, 6qxf:C, 6qxf:D, 6qxf:E, 6qxf:F, 6qxf:G, 6qxf:H
2 3v7f:B 220 218 0.5734 0.5682 0.5734 1.90e-89 3toc:A, 3toc:B, 3v7f:A
3 3qhq:A 222 218 0.5596 0.5495 0.5596 1.55e-88 3qhq:B
4 3s5u:E 213 213 0.4587 0.4695 0.4695 1.03e-66 3s5u:A, 3s5u:B, 3s5u:C, 3s5u:D, 3s5u:F, 3s5u:G, 3s5u:H
5 3vog:A 362 57 0.0826 0.0497 0.3158 1.1 3voh:A, 3voi:A
6 3faw:A 775 72 0.1009 0.0284 0.3056 1.4 3fax:A
7 1gl6:B 420 54 0.0734 0.0381 0.2963 5.0 1gki:A, 1gki:B, 1gki:D, 1gki:E, 1gki:F, 1gki:G, 1gl6:A, 1gl6:D, 1gl6:E, 1gl6:F, 1gl6:G, 1gl7:A, 1gl7:B, 1gl7:D, 1gl7:E, 1gl7:F, 1gl7:G
8 2vhf:A 341 63 0.0780 0.0499 0.2698 5.3 2vhf:B
9 6ogz:A 1082 60 0.0688 0.0139 0.2500 5.4 6ogy:A, 6oj6:P, 2r7r:A, 2r7s:A, 2r7t:A, 2r7u:A, 2r7v:A, 2r7w:A, 2r7x:A, 2r7x:B
10 4onj:B 333 62 0.0826 0.0541 0.2903 7.0 4onj:A, 4onq:A, 4onq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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