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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHAGAEVIV
VCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVITPDDTDREAVNRI
IYEELCLGIISETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ

The query sequence (length=230) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ojc:A 230 230 1.0000 1.0000 1.0000 3.96e-172 3ojc:B
2 5elm:B 235 229 0.5826 0.5702 0.5852 7.11e-99 5elm:C, 5elm:D, 5hra:A, 5hra:B, 5hrc:A, 5hrc:B
3 2dx7:A 228 231 0.3087 0.3114 0.3074 2.66e-28
4 3s7z:B 235 160 0.2261 0.2213 0.3250 6.06e-14
5 2ohv:A 258 155 0.1609 0.1434 0.2387 0.006
6 7uj5:A 256 152 0.1609 0.1445 0.2434 0.023 4b1f:A, 4b1f:B, 8eb3:A, 8eb3:B, 2jfx:A, 2jfx:B, 2jfy:A, 2jfy:B, 2jfz:A, 2jfz:B, 8tba:A, 8tba:B, 7uj5:B, 7uj5:C, 7uj5:D, 5w1q:A, 5w1q:B, 2w4i:A, 2w4i:B, 2w4i:E, 2w4i:F
7 1zuw:C 262 153 0.1522 0.1336 0.2288 0.027 1zuw:A, 1zuw:B
8 6dli:A 256 79 0.1043 0.0938 0.3038 0.031 6dli:B, 6dli:C, 6dli:D, 5w16:A, 5w16:B, 5w16:C, 5w16:D
9 1b74:A 252 72 0.0913 0.0833 0.2917 0.093
10 5in4:A 355 81 0.0913 0.0592 0.2593 0.60 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
11 4gqu:A 191 46 0.0739 0.0890 0.3696 0.69 7ddv:A, 7dnq:A, 7fcy:A, 6khh:A, 4lom:A, 4lpf:A, 5xds:A, 6yjh:A, 5zqn:A
12 2z1m:A 338 70 0.0739 0.0503 0.2429 2.1 2z1m:D, 2z95:A, 2z95:D
13 1gk0:B 522 38 0.0522 0.0230 0.3158 3.1 2adv:C, 1gk0:D, 1gk1:B, 1gk1:D, 1jvz:B, 1jw0:B
14 3hfr:A 266 173 0.1870 0.1617 0.2486 4.0 3hfr:B
15 4lrz:A 211 50 0.0783 0.0853 0.3600 5.2 2btd:A, 4lrz:B, 4lrz:C, 4lrz:D, 3pnl:B
16 4ct9:A 394 39 0.0739 0.0431 0.4359 7.1 4cta:A, 4cta:B, 4uoc:A, 4uoc:B, 4uuw:A, 4uux:A, 4uux:B
17 7muc:BL 173 54 0.0696 0.0925 0.2963 7.8 7muc:CL, 7muc:EL, 7muc:FL, 7muc:GL, 7muc:HL, 7muc:IL, 7muc:JL, 7muc:KL, 7muc:LL, 7muc:AL, 7mud:BL, 7mud:CL, 7mud:DL, 7mud:EL, 7mud:FL, 7mud:GL, 7mud:HL, 7mud:IL, 7mud:JL, 7mud:KL, 7mud:LL, 7mud:ML, 7mud:AL, 7muq:HL, 7muq:IL, 7muq:JL, 7muq:KL, 7muq:LL, 7muq:ML, 7muq:AL, 7muq:BL, 7muq:CL, 7muq:DL, 7muq:EL, 7muq:FL, 7muq:GL, 7mus:HL, 7mus:IL, 7mus:JL, 7mus:KL, 7mus:LL, 7mus:ML, 7mus:AL, 7mus:BL, 7mus:CL, 7mus:DL, 7mus:EL, 7mus:FL, 7mus:GL, 7muv:FL, 7muv:GL, 7muv:HL, 7muv:IL, 7muv:JL, 7muv:KL, 7muv:LL, 7muv:ML, 7muv:AL, 7muv:BL, 7muv:CL, 7muv:DL, 7muv:EL, 7muw:FL, 7muw:GL, 7muw:HL, 7muw:IL, 7muw:JL, 7muw:KL, 7muw:LL, 7muw:ML, 7muw:AL, 7muw:BL, 7muw:CL, 7muw:DL, 7muw:EL, 7muy:FL, 7muy:GL, 7muy:HL, 7muy:IL, 7muy:JL, 7muy:KL, 7muy:LL, 7muy:ML, 7muy:AL, 7muy:BL, 7muy:CL, 7muy:DL, 7muy:EL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218