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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKIIKLYFESPVHFGEKRLSESKITFSADTLFSALMIEAVGLGKEDEFYQLASNNLVKFSDAFPFIDQYYYIPKPMFNLK
LFKKLLYVPIDSLEDYLSFNLGKLALSEKVQQHDFKDSEPYNVGTFTFKENTGLYVLIEQTHPLLEELLENLQYSGIGGK
RNSGYGKFKFEILEDSDIEDLFSAKGNRKILLSGALPKDAELEQALKNASYLLERRGGFVQSDTYATNLVKKQDLYVFKS
GSTFENSFDGDIYQVGKKGNHPVYKYAKSFFLEVS

The query sequence (length=275) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6xn7:B 277 276 1.0000 0.9928 0.9964 0.0 6xn3:B, 6xn4:B
2 9ash:B 297 296 1.0000 0.9259 0.9291 0.0 9asi:B, 6xn5:B
3 7v01:H 297 300 0.5164 0.4781 0.4733 6.26e-85 8do6:B, 7uzw:H, 7uzx:H, 7uzy:H, 7uzz:H, 7v00:H, 7v02:H
4 8wfx:M 296 288 0.3745 0.3480 0.3576 8.28e-49
5 6ifn:B 297 292 0.4145 0.3838 0.3904 1.76e-48 6ifk:B, 6ifr:B, 6ify:B, 6ifz:B, 6ig0:B, 6nud:I, 6nue:I
6 6ifl:G 273 276 0.4036 0.4066 0.4022 2.22e-47 6ifu:G
7 6mur:E 286 285 0.2509 0.2413 0.2421 3.49e-04 6iqw:E, 6mus:E, 6mut:E, 6muu:E, 6o7e:E, 6o7h:E, 6o7i:E
8 2qua:A 615 261 0.1927 0.0862 0.2031 0.15 2qub:A, 2qub:C, 2qub:E, 2qub:G, 2qub:I, 2qub:K
9 8z9e:B 170 44 0.0545 0.0882 0.3409 0.34 8yhd:A, 8z4j:B, 8z4l:A, 8z99:A, 8z9c:A
10 8yhd:B 199 44 0.0545 0.0754 0.3409 0.43 8yhd:C, 8yhd:D, 8yhd:E, 8yhd:F, 8yhd:J, 8yhd:O, 8yhe:B, 8yhe:C, 8yhe:D, 8yhe:E, 8yhe:F, 8yhe:J, 8z4j:C, 8z4j:D, 8z4j:E, 8z4j:F, 8z4j:J, 8z4l:B, 8z4l:C, 8z4l:D, 8z4l:E, 8z4l:F, 8z4l:J, 8z99:B, 8z99:C, 8z99:D, 8z99:E, 8z99:F, 8z99:J, 8z99:P, 8z9c:B, 8z9c:C, 8z9c:D, 8z9c:E, 8z9c:F, 8z9c:J, 8z9e:C, 8z9e:D, 8z9e:E, 8z9e:F, 8z9e:J
11 7zw0:LN 172 76 0.0764 0.1221 0.2763 0.72 8aaf:s, 8agt:s, 8agu:s, 8agv:s, 8agw:s, 8agx:s, 8agz:s, 5apn:J, 5apo:J, 7azy:h, 7b7d:LM, 8bip:LJ, 8bjq:LJ, 8bn3:M1, 8bqd:AG, 8bqx:AG, 7bt6:J, 7btb:J, 8ccs:NN, 8cdl:NN, 8cdr:NN, 8ceh:NN, 8cf5:NN, 8cg8:NN, 8cgn:NN, 8civ:NN, 8cku:NN, 8cmj:NN, 5dat:M1, 5dat:m1, 5dc3:M1, 5dc3:m1, 5dge:M1, 5dge:m1, 5dgf:M1, 5dgf:m1, 5dgv:M1, 5dgv:m1, 8eub:AJ, 8evp:AJ, 8evq:AJ, 8evr:AJ, 8evs:AJ, 8evt:AJ, 8ewb:AJ, 8ewc:AJ, 5fci:M1, 5fci:m1, 5fcj:M1, 5fcj:m1, 6ft6:J, 5gak:M, 6gq1:J, 6gqb:J, 6gqv:J, 5h4p:J, 6hd7:M, 8hfr:Jy, 6hhq:s, 6hhq:CM, 5i4l:M1, 5i4l:m1, 6i7o:AG, 6i7o:XG, 3j0q:k, 3j6x:51, 3j6y:51, 3j77:61, 3j78:61, 3jct:J, 5jcs:J, 5juo:O, 5jup:O, 5jus:O, 5jut:O, 5juu:O, 8k2d:LJ, 8k82:LJ, 5lyb:M1, 5lyb:m1, 5m1j:J5, 6m62:J, 5mc6:AG, 5mei:s, 5mei:CM, 7mpi:AJ, 7mpj:AJ, 6n8j:J, 6n8k:J, 6n8l:J, 6n8m:M, 6n8n:M, 6n8o:M, 7n8b:AJ, 5ndg:M1, 5ndg:m1, 5ndv:M1, 5ndv:m1, 5ndw:M1, 5ndw:m1, 7nrc:LM, 7nrd:LM, 5obm:M1, 5obm:m1, 7oh3:J, 7ohq:J, 7oht:J, 6oig:J, 5on6:s, 5on6:CM, 7osa:uL5, 7osm:uL5, 8p8m:LO, 8p8n:LO, 8p8u:LO, 8pfr:LO, 6q8y:AG, 6qik:E, 6qt0:E, 6qtz:E, 6r84:M, 6r86:M, 6r87:M, 6ri5:E, 7rr5:LJ, 6rzz:E, 6s05:E, 6s47:AM, 6snt:q, 6sv4:AG, 6sv4:XG, 6sv4:zG, 6t4q:LJ, 5t62:M, 5t6r:M, 6t7i:LJ, 6t7t:LJ, 6t83:Jy, 6t83:Ma, 5tbw:s, 5tbw:CM, 6tb3:AG, 5tga:M1, 5tga:m1, 5tgm:M1, 5tgm:m1, 6tnu:AG, 7too:AL11, 7top:AL11, 4u3m:M1, 4u3m:m1, 4u3n:M1, 4u3n:m1, 4u3u:M1, 4u3u:m1, 4u4n:M1, 4u4n:m1, 4u4o:M1, 4u4o:m1, 4u4q:M1, 4u4q:m1, 4u4r:M1, 4u4r:m1, 4u4u:M1, 4u4u:m1, 4u4y:M1, 4u4y:m1, 4u4z:M1, 4u4z:m1, 4u50:M1, 4u50:m1, 4u51:M1, 4u51:m1, 4u52:M1, 4u52:m1, 4u53:M1, 4u53:m1, 4u55:M1, 4u55:m1, 4u56:M1, 4u56:m1, 4u6f:M1, 4u6f:m1, 7ug6:J, 7uoo:J, 7uqb:J, 7uqz:J, 7v08:J, 4v4b:BJ, 4v6i:BE, 4v7f:E, 4v7h:BJ, 4v7r:BK, 4v7r:DK, 4v88:BJ, 4v88:DJ, 4v8t:J, 4v8y:BJ, 4v8z:BJ, 4v91:J, 6woo:J, 6xiq:J, 6xir:J, 8y0u:LJ, 6ylg:J, 6ylh:J, 7z34:J, 6z6j:LJ, 6z6k:LJ, 7zpq:BJ, 7zrs:BJ, 7zs5:BL, 7zuw:BJ, 7zux:EJ
12 4aqv:C 361 129 0.1018 0.0776 0.2171 0.84 4a28:A, 4a50:A, 4a5y:A, 4a5y:C, 4as7:A, 4b7b:A, 4bbg:A, 4bxn:A, 4bxn:B, 3cjo:A, 3cjo:B, 4ck6:C, 4ck7:C, 2fky:A, 2fky:B, 2fl2:A, 2fl2:B, 2fl6:A, 2fl6:B, 2fme:B, 2g1q:A, 2g1q:B, 6g6z:A, 6hkx:B, 3hqd:A, 3hqd:B, 2ieh:A, 2ieh:B, 1ii6:A, 1ii6:B, 3k3b:A, 3k3b:B, 3k5e:A, 3ken:A, 3l9h:A, 3l9h:B, 2pg2:A, 2pg2:B, 1q0b:A, 1q0b:B, 2q2y:A, 2q2y:B, 2q2z:A, 2q2z:B, 6ta4:K, 6tle:A, 6tle:B, 6trl:B, 2uyi:A, 2uyi:B, 2uym:A, 2uym:B, 2wog:A, 2wog:B, 2wog:C, 2x2r:A, 2x2r:C, 2x7c:A, 2x7c:B, 2x7d:A, 2x7d:B, 2x7e:A, 2x7e:B, 1x88:A, 1x88:B, 2xae:C, 1yrs:A, 1yrs:B, 4zca:A, 4zhi:A, 4zhi:B, 5zo7:A, 5zo7:B
13 6o7b:B 254 132 0.1127 0.1220 0.2348 2.2 6o78:B
14 6c95:A 773 71 0.0836 0.0298 0.3239 5.0 6c9m:A, 6c9m:C, 6ppl:B, 6pw9:B
15 9f1b:DB 837 71 0.0836 0.0275 0.3239 6.5 9f1c:DB, 9f1d:DB, 9fpz:B, 9fq0:B
16 6skf:Au 116 27 0.0364 0.0862 0.3704 8.1 6skg:Au, 6th6:Au, 6tmf:U
17 8yhd:G 234 77 0.0727 0.0855 0.2597 8.5 8yhe:G, 8z4j:G, 8z4l:G, 8z99:G, 8z9c:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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