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BioLiP
>protein
MKIIIEYDSCWRNAFLGGSNNEPVPKKGREFLGSMTSLKKEGNFKVCENTLDTVMGVLNRLIGDQRKLYQARSKMYESAY
YFEALEDKVSFIDKPQLTNEISFIRNMNGSTDQNAFTGMIKVSDPVFTSEYSQQFWGVLALDFTQLCDFIIKQSQVVGSI
ELNPLSIINRLESLNQEKALENSDDLAQVLKVLNEYFPDIEYLNNKGLITPISIYCSALYLQLARLETSFNMTTAKTKAG
GISGISKRGFTKKDFMDRYTTGPKKTIWGNPFIKKEKIKGQGEVTSMMTKASGQLEISIDVDRDKAQEIKILIENAGVSS
FYLGKKGLAYVSNIKL

The query sequence (length=336) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5o6u:F 336 336 1.0000 1.0000 1.0000 0.0 5o7h:F
2 2rgo:B 530 74 0.0655 0.0415 0.2973 0.34
3 3h1m:A 392 120 0.0923 0.0791 0.2583 2.2 3h1w:A, 3h1y:A, 5zvr:A, 5zvu:A, 5zvx:A
4 8u4z:A 313 45 0.0446 0.0479 0.3333 2.3
5 2rgo:A 557 55 0.0536 0.0323 0.3273 2.8 2rgh:A
6 6fb3:A 1836 70 0.0595 0.0109 0.2857 3.1 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
7 3b9o:A 433 52 0.0506 0.0393 0.3269 4.0 3b9o:B
8 6pxu:B 532 108 0.0804 0.0508 0.2500 4.2 6pxu:A
9 2k3u:A 91 47 0.0506 0.1868 0.3617 5.0
10 3vmm:A 471 74 0.0714 0.0510 0.3243 5.8 3wnz:A, 3wo0:A, 3wo1:A
11 9c9y:A 612 49 0.0417 0.0229 0.2857 6.2 9ca0:A, 9ca1:A
12 6jrs:A 3488 54 0.0476 0.0046 0.2963 7.0 6jrs:D, 6jrs:G, 6jrs:J
13 5go9:A 3423 54 0.0476 0.0047 0.2963 7.0 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
14 6jgz:B 3485 54 0.0476 0.0046 0.2963 7.1 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
15 6jiy:A 3521 54 0.0476 0.0045 0.2963 7.2 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
16 2v2f:F 366 130 0.0923 0.0847 0.2385 7.6
17 5nw7:A 440 88 0.0744 0.0568 0.2841 8.7 1pmi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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