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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDA
LRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDLKNHKAKLHFYASSDVESLKNT
AKIWLNLLRK

The query sequence (length=250) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3uhf:A 255 247 0.9880 0.9686 1.0000 0.0 3uhf:B, 3uho:A, 3uho:B
2 7uj5:A 256 254 0.5280 0.5156 0.5197 6.37e-87 4b1f:A, 4b1f:B, 8eb3:A, 8eb3:B, 2jfx:A, 2jfx:B, 2jfy:A, 2jfy:B, 2jfz:A, 2jfz:B, 8tba:A, 8tba:B, 7uj5:B, 7uj5:C, 7uj5:D, 5w1q:A, 5w1q:B, 2w4i:A, 2w4i:B, 2w4i:E, 2w4i:F
3 1b74:A 252 208 0.3840 0.3810 0.4615 2.26e-61
4 1zuw:C 262 209 0.3440 0.3282 0.4115 2.13e-44 1zuw:A, 1zuw:B
5 2vvt:A 269 249 0.3560 0.3309 0.3574 1.66e-43 2jfo:A, 2jfo:B, 2jfp:A, 2jfp:B, 2vvt:B
6 3hfr:A 266 252 0.3560 0.3346 0.3532 2.68e-43 3hfr:B
7 2jfq:A 265 261 0.3720 0.3509 0.3563 5.13e-43 2jfq:B
8 2gzm:A 266 206 0.3200 0.3008 0.3883 2.57e-42 2gzm:B, 2gzm:C, 2gzm:D
9 3out:B 264 199 0.3520 0.3333 0.4422 1.70e-37 3out:A, 3out:C
10 6dli:A 256 187 0.2840 0.2773 0.3797 3.04e-34 6dli:B, 6dli:C, 6dli:D, 5w16:A, 5w16:B, 5w16:C, 5w16:D
11 2ohv:A 258 253 0.3320 0.3217 0.3281 8.19e-34
12 2dwu:B 266 250 0.3280 0.3083 0.3280 1.29e-32 2dwu:A, 2dwu:C
13 5hj7:B 260 252 0.3320 0.3192 0.3294 2.08e-32 5hj7:A
14 5ijw:B 276 256 0.3320 0.3007 0.3242 3.35e-30 5ijw:A
15 2jfn:A 266 234 0.3040 0.2857 0.3248 1.39e-23
16 3s7z:B 235 140 0.1520 0.1617 0.2714 2.26e-04
17 5htk:A 425 74 0.0960 0.0565 0.3243 0.25 5hr5:A, 5htk:B
18 8fkp:NQ 324 96 0.0840 0.0648 0.2188 0.66 8fkr:NQ, 8fkt:NQ, 8fkv:NQ
19 6wh3:A 334 124 0.1160 0.0868 0.2339 0.81 6wh3:B, 6wh3:C, 6wh3:D, 6wh3:E, 6wh3:F, 6wh3:G, 6wh3:H, 6wh3:I, 6wh3:J, 6wh3:K, 6wh3:L, 6wh3:M, 6wh3:N, 6wh3:O, 6wh3:P, 6wh3:Q, 6wh3:R, 6wh3:S, 6wh3:T, 6wh3:U, 6wh3:V, 6wh3:W, 6wh3:X, 6wh3:Y, 6wh3:Z, 6wh3:8, 6wh3:7, 6wh3:6, 6wh3:5, 6wh3:4, 6wh3:3, 6wh3:a, 6wh3:b, 6wh3:c, 6wh3:d, 6wh3:e, 6wh3:f, 6wh3:g, 6wh3:h, 6wh3:i, 6wh3:j, 6wh3:k, 6wh3:l, 6wh3:m, 6wh3:n, 6wh3:o, 6wh3:p, 6wh3:q, 6wh3:r, 6wh3:s, 6wh3:t, 6wh3:u, 6wh3:v, 6wh3:w, 6wh3:x, 6wh3:y, 6wh3:z, 6wh3:1, 6wh3:2
20 1egz:A 291 33 0.0640 0.0550 0.4848 0.92 1egz:B, 1egz:C
21 6gsz:A 863 75 0.0960 0.0278 0.3200 1.2
22 6zwm:E 1117 77 0.0840 0.0188 0.2727 1.4 7pe7:F, 7pe7:E, 7pe8:E, 7pe9:E, 6zwm:F, 6zwo:F
23 2z4r:A 240 33 0.0480 0.0500 0.3636 2.4 2z4r:B, 2z4r:C, 2z4s:A
24 6r5i:A 733 81 0.0840 0.0286 0.2593 4.1 6r5i:B, 6r5n:B, 6r5n:A, 6r5o:B, 6r5o:A, 6r5p:B, 6r5p:A, 6r5r:B, 6r5r:A, 6r5t:B, 6r5t:A, 6r5u:B, 6r5u:A, 6r5v:B, 6r5v:A
25 4emj:A 406 74 0.0720 0.0443 0.2432 4.2 3ef6:A, 4emi:A
26 4fdi:A 494 30 0.0520 0.0263 0.4333 4.4 4fdi:B, 4fdj:A, 4fdj:B
27 8w6c:A 530 46 0.0640 0.0302 0.3478 4.7 8w6c:B, 8w6d:A, 8w6d:B, 8w6g:A, 8w6g:B
28 4v4n:AA 216 56 0.0720 0.0833 0.3214 5.1 4v6u:BA
29 7ozk:A 297 101 0.0760 0.0640 0.1881 7.9 7ozl:A
30 3bb8:A 420 33 0.0480 0.0286 0.3636 8.6 3bb8:B
31 8qj4:A 402 52 0.0600 0.0373 0.2885 9.4 8qj4:B
32 8q5a:A 276 30 0.0520 0.0471 0.4333 10.0 8q58:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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