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BioLiP
>protein
MKIFLDTANIDEIRTGVNWGIVDGVTTNPDLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLG
DNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIK
TQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSP

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3s1u:C 223 217 0.9954 0.9686 0.9954 4.86e-158 3s1u:A, 3s1u:B, 3s1u:D, 3s1u:E, 3s1v:A, 3s1v:B, 3s1v:C, 3s1v:D, 3s1v:E, 3s1x:A, 3s1x:B, 3s1x:C, 3s1x:D, 3s1x:E, 4xz9:B, 4xz9:C, 6yr3:A, 6yr3:B, 6yr3:C, 6yr3:D, 6yr3:E, 6yrh:A, 6yrh:B, 6yrh:C, 6yrh:D, 6yrh:E, 6yrm:A, 6yrm:B, 6yrm:C, 6yrm:D, 6yrm:E, 6yrt:A, 6yrt:B, 6yrt:C, 6yrt:D, 6yrt:E, 6ys0:A, 6ys0:B, 6ys0:C, 6ys0:D, 6ys0:E
2 8bc3:A 217 219 0.4332 0.4332 0.4292 4.85e-44 8bc3:H, 8bc3:B, 8bc3:C, 8bc3:D, 8bc3:E, 8bc3:F, 8bc3:G, 8bc3:I, 8bc3:J, 8bc4:A, 8bc4:B, 8bc4:C, 8bc4:D, 8bc4:E, 8bc4:F, 8bc4:G, 8bc4:H, 8bc4:J
3 5zol:A 222 216 0.3318 0.3243 0.3333 2.07e-37 4s1f:B, 4s1f:G, 4s1f:H, 4s1f:K, 4s1f:P, 5zol:B, 5zol:C, 5zol:D, 5zol:E, 5zol:F, 5zol:G, 5zol:H, 5zol:I, 5zol:J
4 3tk7:A 320 226 0.3180 0.2156 0.3053 1.19e-17 3te9:A, 3te9:B, 3tk7:B, 3tkf:A, 3tkf:B, 3tno:A, 3tno:B, 3upb:A, 3upb:B
5 2e1d:A 321 174 0.2719 0.1838 0.3391 1.94e-17 2e1d:B
6 3kof:A 316 173 0.2535 0.1741 0.3179 9.84e-14 3kof:B, 4s2b:A, 4s2b:B, 4s2c:A, 4s2c:B
7 6zwf:A 352 306 0.3364 0.2074 0.2386 6.57e-09
8 2q40:A 343 122 0.1290 0.0816 0.2295 0.77 1xfi:A
9 6up7:R 322 48 0.0783 0.0528 0.3542 0.78 8jpb:R, 8jpc:R, 8jpf:R, 6os9:R, 6osa:R
10 6lvu:A 78 51 0.0507 0.1410 0.2157 1.1 6lvu:B
11 1sg9:A 274 58 0.0783 0.0620 0.2931 1.2 1nv8:A, 1nv8:B, 1nv9:A, 1sg9:B, 1sg9:C, 1vq1:A, 1vq1:B
12 7f5s:LB 402 103 0.1198 0.0647 0.2524 1.7 7a01:52, 8a3d:E, 5aj0:AB, 8b5l:B, 8b6c:B, 9bdl:AL03, 9bdn:AL03, 9bdp:AL03, 7bhp:LB, 8bhf:k3, 8bpo:B2, 8btk:BB, 7cpu:LB, 7cpv:LB, 4d5y:B, 4d67:B, 6d90:B, 6d9j:B, 9f1b:BB, 9f1c:BB, 9f1d:BB, 8fkp:LN, 8fkq:LN, 8fkr:LN, 8fks:LN, 8fl2:LN, 8fl3:LN, 8fl4:LN, 8fl6:LN, 8fl7:LN, 8fl9:LN, 8fla:LN, 8flb:LN, 8flc:LN, 8fld:LN, 8fle:LN, 8flf:LN, 6frk:B, 6ftg:B, 6fti:B, 6ftj:B, 8g5y:LB, 8g5z:LB, 8g60:LB, 8g61:LB, 8g6j:LB, 8glp:LB, 6gz3:AB, 6gz4:AB, 6gz5:AB, 6hcf:B3, 6hcj:B3, 6hcm:B3, 6hcq:B3, 8idt:B, 8idy:B, 8ie3:B, 8ifd:1E, 8ife:1E, 8ine:B, 8inf:B, 8ink:B, 6ip5:1E, 6ip6:1E, 6ip8:1E, 8ipd:B, 8ipx:B, 8ipy:B, 8ir1:B, 8ir3:B, 3j7o:B, 3j7p:B, 3j7q:B, 3j7r:B, 3j92:B, 3jag:B, 3jah:B, 3jai:B, 3jaj:B, 3jan:B, 8jdj:H, 8jdk:H, 8jdl:H, 8jdm:H, 8k2c:LB, 5lks:LB, 6lqm:B, 6lsr:B, 6lss:B, 7ls1:E2, 7ls2:E2, 6lu8:B, 5lzs:B, 5lzt:B, 5lzu:B, 5lzv:B, 5lzw:B, 5lzx:B, 5lzy:B, 5lzz:B, 7mdz:B, 6mtb:B, 6mtc:B, 6mtd:B, 6mte:B, 7nfx:B, 7nwg:B3, 7nwh:B, 7nwi:B, 7o7y:BB, 7o7z:BB, 7o80:BB, 7o81:BB, 7obr:B, 8ohd:LB, 8oj0:LB, 8oj5:LB, 8oj8:LB, 6ole:B, 6olf:B, 6olg:AB, 6oli:B, 6olz:AB, 6om0:B, 6om7:B, 7ow7:E, 7oya:B1, 7oyb:B1, 7oyc:B1, 7oyd:B, 8p2k:BB, 6p5i:AB, 6p5j:AB, 6p5k:AB, 6p5n:AB, 8q7z:BB, 8q87:BB, 8qfd:B, 7qgg:B, 8qoi:LB, 7qvp:LB, 7qvp:MB, 7qwq:B, 7qwr:B, 7qws:B, 6qzp:LB, 6r5q:B, 6r6g:B, 6r6p:B, 6r7q:B, 8rjb:w, 8rjc:w, 8rjd:w, 8scb:B, 6sgc:B2, 6swa:B, 5t2c:E, 6t59:B3, 7tm3:w, 7toq:AL03, 7tor:AL03, 7tut:w, 7ucj:B, 7uck:B, 4ug0:LB, 4ujc:BB, 4ujd:AB, 4uje:CB, 4v5z:Bb, 4v6x:CB, 6w6l:B, 6xa1:LB, 7xnx:LB, 7xny:LB, 8xsx:LB, 8xsy:LB, 8xsz:LB, 6y0g:LB, 8y0w:LB, 8y0x:LB, 6y2l:LB, 6y57:LB, 6y6x:LB, 8yoo:LB, 8yop:LB, 6z6l:LB, 6z6m:LB, 6z6n:LB, 7zjw:LE, 7zjx:LE, 6zm7:LB, 6zme:LB, 6zmi:LB, 6zmo:LB, 6zvk:52
13 8fkt:LN 358 103 0.1198 0.0726 0.2524 2.0 8fku:LN, 8fkv:LN, 8fkw:LN, 8fkx:LN, 8fky:LN, 8fkz:LN, 8fl0:LN
14 4xes:A 471 70 0.0968 0.0446 0.3000 2.6 4buo:B, 8fmz:A, 8fn0:A, 8fn1:A, 7l0p:C, 7l0q:C, 7l0r:C, 7l0s:C, 4xee:A
15 8ui7:C 339 48 0.0737 0.0472 0.3333 2.8 8ui8:C, 8ui9:C, 8uii:C, 8umt:C, 8umu:C, 8umv:C, 8umw:C, 8umy:C, 8un0:C, 8unj:C, 6vvo:C, 7z6h:G
16 3gri:B 423 83 0.1152 0.0591 0.3012 4.2 3gri:A
17 5irp:A 386 54 0.0829 0.0466 0.3333 5.5 5irp:B, 6q70:A, 6q70:B, 6q71:A, 6q71:B, 6q72:A, 6q72:B, 6q72:D, 6q72:E
18 1hsl:A 238 18 0.0461 0.0420 0.5556 5.7 1hsl:B
19 5wbj:A 1058 39 0.0599 0.0123 0.3333 8.3 5wbk:A, 5wbl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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