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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKIDILDKGFVELVDVMGNDLSAVRAARVSKDEERDRHLIEYLMKHGHETPFEHIVFTFHVKAPIFVARQWFRHRIASYN
ELSGRYSKLSYEFYIPSPERLEGYKTTIPPERVTEKISEIVDKAYRTYLELIESGVPREVARIVLPLNLYTRFFWTVNAR
SLMNFLNLAADSHAQWEIQQYALAIARIFKEKCPWTFEAFLKYAYKGDILKEV

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1o26:B 221 218 0.9953 0.9593 0.9725 9.98e-157 5chp:A, 3g4a:A, 3g4a:D, 3g4a:C, 3g4a:B, 3g4c:A, 3g4c:D, 3g4c:C, 3g4c:B, 4gt9:A, 4gta:A, 4gtb:A, 4gtc:A, 4gtc:C, 4gtc:B, 4gtc:D, 4gtd:A, 4gtd:D, 4gtd:C, 4gtd:B, 4gte:A, 4gte:C, 4gte:B, 4gte:D, 4gtf:A, 4gtl:B, 4gtl:D, 4gtl:A, 4gtl:C, 5ioq:A, 5ioq:B, 5ioq:C, 5ioq:D, 5ior:A, 5ios:A, 5ios:B, 5ios:C, 5ios:D, 5iot:A, 5iot:B, 5iot:D, 5iot:C, 5jfe:A, 4kar:A, 4kar:C, 4kar:B, 4kar:D, 4kas:A, 4kas:D, 4kas:B, 4kas:C, 4kat:A, 4kat:D, 4kat:C, 4kat:B, 1kq4:A, 1kq4:C, 1kq4:D, 1kq4:B, 3n0b:A, 3n0b:D, 3n0b:C, 3n0b:B, 3n0c:A, 3n0c:D, 3n0c:C, 3n0c:B, 7ndw:A, 7ndw:C, 7ndw:D, 7ndw:B, 7ndz:A, 7ndz:C, 7ndz:D, 7ndz:B, 1o25:A, 1o25:D, 1o25:B, 1o25:C, 1o26:A, 1o26:D, 1o26:C, 1o27:A, 1o27:D, 1o27:C, 1o27:B, 1o28:A, 1o28:D, 1o28:B, 1o28:C, 1o29:A, 1o29:D, 1o29:C, 1o29:B, 1o2a:A, 1o2a:C, 1o2a:D, 1o2a:B, 1o2b:A, 1o2b:C, 1o2b:D, 1o2b:B
2 6j61:A 242 215 0.5117 0.4504 0.5070 4.37e-66 6j61:B, 6j61:D, 6j61:C
3 4p5b:B 235 231 0.4085 0.3702 0.3766 8.13e-40 4p5a:A, 4p5a:B, 4p5a:C, 4p5a:D, 4p5b:A, 4p5b:C, 4p5b:D
4 4fzb:C 207 174 0.2254 0.2319 0.2759 6.04e-11 4fzb:A, 4fzb:D, 4fzb:B, 4fzb:E, 4fzb:G, 4fzb:F, 4fzb:I, 4fzb:K, 4fzb:L, 4fzb:M, 4fzb:O, 4fzb:P
5 3ah5:A 215 164 0.2207 0.2186 0.2866 4.71e-10 3ah5:C, 3ah5:B, 3ah5:D, 3ah5:E, 3ah5:F, 3n3y:A, 3n3y:B, 3n3y:C, 3n3y:D
6 2af6:G 246 182 0.2254 0.1951 0.2637 6.66e-08 2af6:A, 2af6:B, 2af6:D, 2af6:C, 2af6:E, 2af6:F, 2af6:H, 2gq2:A, 2gq2:C, 2gq2:D, 2gq2:B, 3gwc:A, 3gwc:B, 3gwc:D, 3gwc:C, 3gwc:E, 3gwc:F, 3gwc:H, 3gwc:G, 3hzg:A, 3hzg:B, 3hzg:D, 3hzg:C
7 2cfa:A 180 171 0.2113 0.2500 0.2632 1.57e-07 2cfa:B, 4fzb:H, 4fzb:J, 4fzb:N
8 3fnn:A 227 167 0.1925 0.1806 0.2455 1.83e-04
9 8fru:O 196 69 0.0939 0.1020 0.2899 0.98 8br8:LP, 8brm:LP, 8bsi:LP, 8bsj:LP, 8btd:LP, 8btr:LP, 7pwg:O, 7pwo:O2
10 4fkc:A 370 58 0.0798 0.0459 0.2931 2.6 4rgz:A, 4rgz:N, 4rgz:1, 4rgz:e
11 3tp9:A 473 98 0.1127 0.0507 0.2449 5.0 3tp9:B
12 6z1p:Bu 559 34 0.0516 0.0197 0.3235 7.5
13 4fj0:D 261 53 0.0657 0.0536 0.2642 8.3 4fiz:A, 4fj0:A, 4fj0:B, 4fj0:C, 4fj1:A, 4fj1:B, 4fj1:C, 4fj1:D, 4fj2:A, 4fj2:B, 4fj2:C, 4fj2:D, 3qwf:A, 3qwf:B, 3qwf:C, 3qwf:D, 3qwf:E, 3qwf:F, 3qwf:G, 3qwf:H, 3qwh:A, 3qwh:B, 3qwh:C, 3qwh:D, 3qwi:A, 3qwi:B, 3qwi:C, 3qwi:D
14 8gzh:Z 1217 77 0.0939 0.0164 0.2597 8.6
15 8gzg:Z 1175 77 0.0939 0.0170 0.2597 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218