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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKIAVMTDSTSYLSQDLIDKYNIQIAPLSVTFDDGKNFTESNEIAIEEFYNKMASSQTIPTTSQPAIGEWITKYEMLRDQ
GYTDIIVICLSSGISGSYQSSYQAGEMVEGVNVHAFDSKLAAMIEGCYVLRAIEMVEEGYEPQQIIDDLTNMREHTGAYL
IVDDLKNLQKSGRITGAQAWVMKPVLKFEDGKIIPEEKVRTKKRAIQTLEKKVLDIVKDFEEVTLFVINGDHFEDGQALY
KKLQDDCPSAYQVAYSEFGPVVAAHLGSGGLGLGYVGRKIRLT

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6alw:A 288 288 1.0000 0.9826 0.9826 0.0 6alw:B, 6b9i:A, 6b9i:B
2 3fys:A 282 281 0.3534 0.3546 0.3559 1.09e-54
3 3lup:A 283 285 0.2933 0.2933 0.2912 3.45e-36
4 2dt8:A 280 282 0.2968 0.3000 0.2979 1.53e-29
5 2g7z:A 275 209 0.2261 0.2327 0.3062 2.17e-21 2g7z:B
6 6nr1:A 279 283 0.2615 0.2652 0.2615 1.15e-17 6nr1:B
7 5v85:B 279 214 0.1837 0.1864 0.2430 4.12e-13 5v85:A
8 5uxy:A 276 153 0.1237 0.1268 0.2288 3.51e-04
9 2gjw:A 308 79 0.0707 0.0649 0.2532 2.7 2gjw:B, 2gjw:C, 2gjw:D
10 7ob9:A 1535 95 0.0813 0.0150 0.2421 2.8 7oba:A
11 4nl8:A 549 67 0.0636 0.0328 0.2687 3.0
12 3ikw:A 373 53 0.0530 0.0402 0.2830 3.8 3ilr:A, 3imn:A, 3in9:A, 3ina:A
13 5klq:A 324 33 0.0424 0.0370 0.3636 5.6 5klp:A, 5klp:B, 5klp:C, 5klq:C, 5klq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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