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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKIAVLSRNPRLYSTRRLVEAGRERGHEMVVIDTLRAYMNIASHKPQIHYRGQPLEGFDAVIPRIGASVTFYGCAVLRQF
EMMGVFPLNESVAIARSRDKLRSLQLLSRKGIGLPVTGFAHSPDDVPDLIEMVGGAPLVIKLLEGTQGIGVVLCETEKAA
ESVLEAFMGLKHNIMVQEYIKEAGGADIRCFVVGDKVIASMKRQAAPSASLIKITPEERMTAIRAARVMGLNVAGVDILR
SNHGPLVMEVNSSPGLEGIESTTGKDIAGIIIQYLEKNG

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qyr:D 293 290 1.0000 0.9522 0.9621 0.0 7qyr:A, 7qyr:B, 7qyr:C, 7qyr:E, 7qyr:F, 7qyr:G, 7qyr:H, 7qys:A, 7qys:B, 7qys:C, 7qys:D, 7qys:E, 7qys:G, 7qys:H, 7qys:J, 7qys:K, 7qys:M, 7qys:O
2 4iwx:A 294 289 0.6667 0.6327 0.6436 3.16e-132 4iwy:A, 5zct:A, 5zct:B, 5zct:C, 5zct:D, 5zct:E, 5zct:F, 5zct:G, 5zct:H, 5zk6:A
3 3vpd:A 281 237 0.2616 0.2598 0.3080 1.42e-18 3vpd:B
4 1uc9:A 256 225 0.2473 0.2695 0.3067 3.77e-15 1uc9:B
5 3vpb:B 282 236 0.2401 0.2376 0.2839 2.66e-13 3vpb:A, 3vpb:C, 3vpb:D, 3vpc:A, 3vpc:B, 3vpc:C, 3vpc:D
6 5k2m:G 273 226 0.2186 0.2234 0.2699 1.97e-11 5k2m:I, 5k2m:A, 5k2m:B, 5k2m:C, 5k2m:D, 5k2m:H, 5k2m:J
7 7drp:A 312 100 0.1147 0.1026 0.3200 1.96e-07 7drm:A, 7drm:B, 7drm:C, 7drm:D, 7drn:A, 7drn:B, 7drn:C, 7dro:A, 7dro:B, 7dro:C, 7dro:E, 7drp:C, 7drp:D, 7drp:B
8 7wae:B 877 113 0.1326 0.0422 0.3274 7.97e-06 7wad:A, 7wad:B, 7wad:C, 7wad:D, 7wae:D, 7wae:A, 7wae:C, 7waf:A, 7waf:C, 7waf:D, 7waf:B
9 7wae:B 877 105 0.1004 0.0319 0.2667 0.12 7wad:A, 7wad:B, 7wad:C, 7wad:D, 7wae:D, 7wae:A, 7wae:C, 7waf:A, 7waf:C, 7waf:D, 7waf:B
10 7lg5:A 871 105 0.1147 0.0367 0.3048 1.40e-05 7lg5:B, 7lg5:C, 7lg5:D, 7lgj:A, 7lgj:B, 7lgj:C, 7lgj:D, 7lgq:A, 7lgq:B, 7lgq:C, 7lgq:D, 7txu:A, 7txu:B, 7txu:C, 7txu:D, 7txv:A, 7txv:B, 7txv:C, 7txv:D
11 3r5x:D 306 163 0.1577 0.1438 0.2699 0.003 3r5x:A, 3r5x:B
12 7lgm:A 719 113 0.1183 0.0459 0.2920 0.009 7lgm:B
13 7lgm:A 719 76 0.0932 0.0362 0.3421 0.051 7lgm:B
14 3r5x:C 284 148 0.1362 0.1338 0.2568 0.065
15 3hbj:A 445 52 0.0645 0.0404 0.3462 0.10 3hbf:A
16 3rfc:A 344 251 0.2186 0.1773 0.2430 0.12 4l1k:A, 4me6:A, 3r5f:A
17 6dre:A 365 159 0.1398 0.1068 0.2453 0.20 6drh:C
18 3i12:A 360 239 0.1828 0.1417 0.2134 0.54 3i12:B, 3i12:C, 3i12:D, 3q1k:A, 3q1k:B, 3q1k:C, 3q1k:D
19 7x9e:B 211 99 0.1004 0.1327 0.2828 1.0 7x9e:D
20 2yw2:A 423 136 0.1219 0.0804 0.2500 1.1 2yw2:B
21 8cko:A 492 114 0.1111 0.0630 0.2719 1.6 8ckd:A, 8cke:A, 6i7w:A, 4ra1:A, 4ze9:A, 4zeb:A, 4zeb:B, 4zec:A, 4zed:A, 4zei:A, 4zek:A
22 2gpy:B 192 35 0.0430 0.0625 0.3429 2.1 2gpy:A
23 5ts2:A 165 46 0.0538 0.0909 0.3261 2.3 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
24 8jzn:A 1489 56 0.0573 0.0107 0.2857 3.8
25 6xlz:L 214 102 0.0968 0.1262 0.2647 5.1
26 2qb5:A 338 67 0.0753 0.0621 0.3134 6.3 2q7d:A, 2q7d:B, 2qb5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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