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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIA
TPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFLRESKALYDNLYPSRIIV
SCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGIS
YDDRIGMHYNNPSFGYGGYSLPKDTKQLLANYNNIPQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMK
SNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDNELQDVKNKVYSRDIFG
RD

The query sequence (length=402) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dli:A 402 402 0.9975 0.9975 0.9975 0.0 1dlj:A
2 3pjg:A 389 402 0.5448 0.5630 0.5448 3.90e-153 3pln:A, 3plr:A
3 7kws:A 390 406 0.4925 0.5077 0.4877 2.67e-126 7kws:B
4 2y0c:A 461 387 0.2612 0.2278 0.2713 3.37e-40 2y0c:B, 2y0c:C, 2y0c:D, 2y0d:A, 2y0d:B, 2y0d:C, 2y0d:D, 2y0e:A, 2y0e:B, 2y0e:C, 2y0e:D
5 4a7p:A 429 364 0.2537 0.2378 0.2802 7.60e-38 4a7p:B
6 3vtf:A 432 421 0.2786 0.2593 0.2660 2.43e-34
7 3gg2:A 431 372 0.2587 0.2413 0.2796 3.22e-32 3gg2:D, 3gg2:B, 3gg2:C
8 1mfz:A 436 433 0.2711 0.2500 0.2517 3.57e-29 1mfz:B, 1mfz:C, 1mfz:D, 1muu:C, 1muu:A, 1muu:B, 1muu:D, 1mv8:B, 1mv8:A, 1mv8:C, 1mv8:D
9 6om8:D 468 388 0.2488 0.2137 0.2577 2.79e-26 6om8:A, 6om8:B, 6om8:C, 6om8:E, 6om8:F, 6om8:G, 6om8:H, 6om8:I, 6om8:J, 6om8:K, 6om8:L
10 3khu:B 467 371 0.2239 0.1927 0.2426 1.18e-21 6c4j:A, 6c4j:B, 6c4j:C, 6c4j:D, 6c4j:E, 6c4j:F, 6c4j:G, 6c4j:H, 6c4j:I, 6c4j:J, 6c4j:K, 6c4j:L, 6c58:A, 6c58:B, 6c58:C, 6c58:D, 6c58:E, 6c58:F, 6c5a:A, 6c5a:B, 6c5a:C, 6c5a:D, 6c5a:E, 6c5a:F, 6c5z:A, 6c5z:B, 6c5z:C, 6c5z:D, 6c5z:E, 6c5z:F, 3khu:A, 3khu:C, 3khu:D, 3khu:E, 3khu:F, 3prj:A, 3prj:B, 3prj:C, 3prj:D, 3prj:E, 3prj:F, 3ptz:A, 3ptz:B, 3ptz:C, 3ptz:D, 3ptz:E, 3ptz:F, 2q3e:A, 2q3e:B, 2q3e:C, 2q3e:D, 2q3e:E, 2q3e:F, 2q3e:G, 2q3e:H, 2q3e:I, 2q3e:J, 2q3e:K, 2q3e:L, 2qg4:A, 2qg4:B, 2qg4:C, 2qg4:D, 2qg4:E, 2qg4:F, 2qg4:G, 2qg4:H, 3tdk:A, 3tdk:B, 3tdk:G, 3tdk:H, 3tdk:L, 3tdk:K, 3tdk:F, 3tdk:E, 3tdk:D, 3tdk:C, 3tdk:J, 3tdk:I, 5tjh:A, 5tjh:B, 5tjh:C, 5tjh:D, 5tjh:E, 5tjh:F, 5vr8:A, 5vr8:B, 5vr8:C, 5vr8:D, 5vr8:E, 5vr8:F
11 4edf:A 431 361 0.2189 0.2042 0.2438 2.69e-20 4edf:B, 4edf:C, 4edf:D
12 4r16:A 418 396 0.2612 0.2512 0.2652 4.74e-19 4r16:B
13 3ojl:A 418 373 0.2413 0.2321 0.2601 4.53e-14 3ojl:B, 3ojo:A, 3ojo:B
14 4xr9:A 456 389 0.2164 0.1908 0.2237 7.55e-12
15 1dxl:A 467 143 0.0970 0.0835 0.2727 0.11 1dxl:B, 1dxl:C, 1dxl:D
16 3lxx:A 169 80 0.0572 0.1361 0.2875 0.39
17 6z3c:AAA 379 137 0.0896 0.0950 0.2628 0.40 6z3b:A, 6z3b:B, 6z3c:BBB
18 5x20:A 312 39 0.0398 0.0513 0.4103 0.88 3wfj:A, 3wfj:B, 3wfj:C, 3wfj:D, 3wfj:E, 3wfj:G, 5x20:B, 5x20:C, 5x20:D, 5x20:E
19 1n1e:A 349 87 0.0672 0.0774 0.3103 2.4 1evz:A, 1jdj:A, 1m66:A, 1m67:A, 1n1e:B, 1n1g:A
20 3dtt:B 222 28 0.0398 0.0721 0.5714 2.5 3dtt:A
21 2r9z:B 453 28 0.0323 0.0287 0.4643 2.7 2r9z:A, 2rab:A, 2rab:B
22 5ifw:B 702 108 0.0771 0.0442 0.2870 3.4
23 5uyy:A 373 92 0.0522 0.0563 0.2283 3.7 7mqv:A, 7mqv:B, 7mqv:C, 7mqv:D, 6u60:A, 6u60:B, 5uyy:B, 5uyy:C, 5uyy:D
24 6xkb:C 139 106 0.0597 0.1727 0.2264 4.7 6xkb:B, 6xkb:A, 6xkb:E, 6xkb:D
25 8wcf:A 160 117 0.0721 0.1812 0.2479 5.8
26 6aon:A 473 32 0.0348 0.0296 0.4375 6.0 6aon:B
27 1obb:A 478 98 0.0597 0.0502 0.2449 6.7 1obb:B
28 6ugl:A 200 68 0.0373 0.0750 0.2206 7.0
29 8v87:3 656 57 0.0448 0.0274 0.3158 7.4 8v84:3
30 6ct6:B 331 34 0.0323 0.0393 0.3824 7.8 6ct6:A
31 3hwr:A 299 107 0.0697 0.0936 0.2617 8.0 3hwr:B
32 6ide:B 228 68 0.0373 0.0658 0.2206 8.8 6ide:A, 6kju:A, 6kju:B, 6ugl:B
33 4v02:A 244 52 0.0423 0.0697 0.3269 10.0 4v02:B, 4v03:A, 4v03:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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