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BioLiP
>protein
MKIAKVINNNVISVVNEQGKELVVMGRGLAFQKKSGDDVDEARIEKVFTLDNKDV

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1l1c:A 55 55 1.0000 1.0000 1.0000 3.27e-33 1l1c:B
2 8u0z:A 260 37 0.1818 0.0385 0.2703 0.54 8u0z:B
3 6k0g:A 335 50 0.3273 0.0537 0.3600 1.8 6k0h:A, 6k0i:A
4 3fvz:A 329 46 0.2364 0.0395 0.2826 3.9 3fw0:A
5 5vt9:B 139 18 0.1636 0.0647 0.5000 4.9 5vt9:A
6 8jfl:A 970 37 0.2364 0.0134 0.3514 5.4 8jfl:E, 8jfl:M, 8jfl:I, 8xy7:A
7 8jfk:M 986 37 0.2364 0.0132 0.3514 5.4 8jfk:A, 8jfk:I, 8jfk:E, 8xya:A, 8xyb:A
8 3t2z:A 427 33 0.1636 0.0211 0.2727 7.9 3kpk:A, 3sx6:A, 3sxi:A, 3sy4:A, 3syi:A, 3sz0:A, 3szc:A, 3szf:A, 3szw:A, 3t0k:A, 3t14:A, 3t2k:A, 3t2y:A, 3t2z:B, 3t31:A
9 4n54:A 340 19 0.1455 0.0235 0.4211 9.4 4n54:B, 4n54:C, 4n54:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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