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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVVNSNLAILSAQKFMAK
YKSKIYYLFTDIRLPFSQSEEELLIKSPIKVISQGINLDIAKAAHKKVDNVIEFEYFPIEQYKIHMNDFQLSKPTKKTLD
VIYGGSFRSGQRESKMVEFLFDTGLNIEFFGNAREKQFKNPKYPWTKAPVFTGKIPMNMVSEKNSQAIAALIIGDKNYND
NFITLRVWETMASDAVMLIDEEFDTKHRIINDARFYVNNRAELIDRVNELKHSDVLRKEMLSIQHDILNKTRAKKAEWQD
AFKKAIDL

The query sequence (length=328) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bgu:A 328 328 1.0000 1.0000 1.0000 0.0
2 1ixy:A 351 351 1.0000 0.9345 0.9345 0.0 1c3j:A, 1ixy:B, 1j39:A, 1jg6:A, 1jg7:A, 1jiu:A, 1jiv:A, 1jix:A, 1m5r:A, 1m5r:B, 1nvk:A, 1nzd:A, 1nzf:A, 1qkj:A, 1sxp:A, 1sxp:B, 1sxq:A, 1sxq:B
3 3v77:A 224 61 0.0518 0.0759 0.2787 0.60 3v77:B, 3v77:C, 3v77:D, 3v77:E, 3v77:F
4 7lt2:A 387 119 0.0945 0.0801 0.2605 3.0
5 8bh6:j 102 102 0.0823 0.2647 0.2647 3.1 7aso:1, 7asp:a, 7bge:j, 8bh7:j, 8buu:j, 8byv:j, 8cdu:K, 8cec:R, 8ced:K, 8cee:K, 6fxc:Aj, 6fxc:Bj, 6ha1:j, 6ha8:j, 6htq:j, 3j9w:AJ, 7kwg:j, 5li0:j, 5nd8:j, 5nd9:j, 5ngm:Aj, 7nhl:k, 7nhm:k, 5njt:J, 7o5b:J, 8p2f:k, 8p2g:k, 8p2h:k, 7p48:j, 8qcq:j, 7qgu:o, 7qh4:n, 8qpp:J, 7qv1:j, 7qv2:j, 7qv3:j, 8r55:J, 6s0x:j, 6s13:j, 5t7v:S1, 5tcu:S1, 8y38:j, 8y39:j, 6yef:j
6 5c4i:A 394 103 0.0823 0.0685 0.2621 3.6 5c4i:D, 5exd:A, 5exd:D, 5exd:G, 5exd:J, 5exe:A, 5exe:D
7 6h0h:A 410 75 0.0671 0.0537 0.2933 3.6 6h0h:B
8 4oe4:B 481 41 0.0396 0.0270 0.3171 4.2 4oe4:A
9 7acv:A 307 48 0.0457 0.0489 0.3125 6.3
10 6wmp:C 1196 45 0.0457 0.0125 0.3333 7.2 6wmr:C, 6wmt:C
11 4dx9:y 93 48 0.0549 0.1935 0.3750 7.4
12 4eso:B 251 56 0.0457 0.0598 0.2679 7.5 4eso:A, 4eso:C, 4eso:D
13 5zba:A 360 31 0.0335 0.0306 0.3548 8.5
14 3ahc:A 802 46 0.0488 0.0200 0.3478 9.8 3ahd:A, 3ahe:A, 3ahf:A, 3ahg:A, 3ahh:A, 3ahi:A, 3ahj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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