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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1bdt:B 53 53 0.9811 0.9811 0.9811 5.06e-33 1bdt:A, 1bdt:C, 1bdt:D, 1bdv:A, 1bdv:B, 1bdv:C, 1bdv:D, 1par:A, 1par:B, 1par:C, 1par:D
2 3qoq:A 50 38 0.2642 0.2800 0.3684 0.059 3qoq:B, 3qoq:C, 3qoq:D
3 6ejp:D 90 32 0.1887 0.1111 0.3125 2.3 6ejp:C
4 2fld:A 161 42 0.2642 0.0870 0.3333 2.8 3ko2:A, 3ko2:B, 3ko2:F, 3ko2:G, 1m5x:A, 1m5x:B, 3mis:A, 3mis:B
5 6q7i:A 770 21 0.1698 0.0117 0.4286 2.8 6q7j:A, 6q7j:B
6 3fd2:A 338 42 0.2642 0.0414 0.3333 3.2 2fld:B, 3mip:A, 3mip:B
7 3fd2:A 338 42 0.2642 0.0414 0.3333 3.2 2fld:B, 3mip:A, 3mip:B
8 5d3m:A 280 19 0.1887 0.0357 0.5263 4.2 8bmp:A, 8bmq:A, 8bms:A, 5d3m:E
9 2p5v:G 158 39 0.2830 0.0949 0.3846 5.0 2p5v:A, 2p5v:B, 2p5v:C, 2p5v:E, 2p5v:D, 2p5v:F, 2p5v:H, 2p6s:A, 2p6s:G, 2p6s:B, 2p6s:D, 2p6s:C, 2p6s:F, 2p6s:E, 2p6s:H, 2p6t:A, 2p6t:G, 2p6t:B, 2p6t:D, 2p6t:C, 2p6t:F, 2p6t:E, 2p6t:H
10 7dsx:B 509 43 0.2453 0.0255 0.3023 6.6 7dsv:A, 7dsv:B, 7dsw:B, 7dsw:A, 7dsx:A
11 3e78:A 365 22 0.1698 0.0247 0.4091 7.0 3e79:A, 3eki:A
12 7vg5:A 204 45 0.2642 0.0686 0.3111 8.6 7vg5:B
13 1yo7:A 120 62 0.3396 0.1500 0.2903 8.7 1yo7:B
14 7mvz:A 1641 29 0.1698 0.0055 0.3103 9.3 7tbi:F1, 7tbi:F2, 7tbj:F1, 7tbj:F2, 7tbk:F1, 7tbk:F2, 7tbl:F1, 7tbl:F2, 7tbm:F1, 7tbm:F2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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