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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKFTVEREHLLKPLQQVSPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIA
VQLEGERMLVRSGRSRFSLSTLPAADFPNLDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTV
ATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPK
NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNA
LKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL

The query sequence (length=356) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6p81:A 440 364 0.9944 0.8045 0.9725 0.0 7az5:A, 7az5:B, 7az5:C, 7az5:D, 7az6:A, 7az7:A, 7az8:A, 7az8:B, 7azc:A, 7azc:C, 7azc:B, 7azc:D, 7azd:A, 7azd:B, 7azd:D, 7azd:C, 7aze:A, 7aze:B, 7azf:A, 7azf:D, 7azf:B, 7azf:C, 7azg:A, 7azg:C, 7azg:B, 7azg:D, 7azg:E, 7azg:G, 7azg:F, 7azg:H, 7azk:A, 7azk:B, 7azk:C, 7azk:D, 7azl:A, 7azl:B, 7azl:C, 7azl:D, 3bep:B, 3bep:A, 8cix:A, 8ciy:A, 8ciz:A, 8ciz:B, 3d1e:A, 3d1f:A, 3d1f:B, 3d1g:A, 3d1g:B, 3f1v:A, 3f1v:B, 6fvl:A, 6fvl:B, 6fvl:C, 6fvl:D, 6fvm:A, 6fvm:B, 5jne:C, 5jne:G, 4k3k:A, 4k3k:B, 4k3l:A, 4k3l:B, 4k3m:A, 4k3m:B, 4k3o:A, 4k3o:B, 4k3p:A, 4k3q:A, 4k3q:B, 4k3r:A, 4k3s:A, 4k74:A, 4k74:B, 5m1s:C, 4mjp:B, 4mjq:A, 4mjq:B, 4mjr:A, 4mjr:B, 4n94:A, 4n94:B, 4n95:A, 4n96:A, 4n96:B, 4n97:A, 4n97:B, 4n98:A, 4n98:B, 4n99:A, 4n99:B, 4n9a:A, 4n9a:B, 1ok7:B, 4ovf:A, 4ovf:B, 4ovg:A, 4ovg:B, 4ovh:A, 8pat:A, 8pay:A, 4pnu:A, 4pnu:B, 4pnv:A, 4pnv:B, 4pnw:A, 4pnw:B, 3q4j:B, 3q4j:C, 3q4j:D, 3q4j:E, 3q4j:F, 3q4k:A, 3q4k:B, 3q4l:A, 3q4l:B, 3qsb:A, 3qsb:B, 3v62:A, 3v62:D, 8var:G
2 6pth:A 369 369 0.5646 0.5447 0.5447 5.10e-130 4tsz:A, 4tsz:B, 4tsz:C, 4tsz:D, 4tsz:E, 4tsz:F, 4tsz:G, 4tsz:H, 4tsz:I, 4tsz:J, 4tsz:K, 4tsz:L, 4tsz:M, 4tsz:N, 4tsz:O, 4tsz:P
3 6ptr:B 372 373 0.4017 0.3844 0.3834 8.35e-79 6ptr:A
4 6djk:A 376 375 0.3146 0.2979 0.2987 3.63e-52
5 6dm6:A 378 376 0.3034 0.2857 0.2872 1.15e-49 6dm6:B, 6ptv:B, 6ptv:C
6 8dt6:C 381 347 0.2444 0.2283 0.2507 1.66e-33 8dt6:A, 8dt6:B, 8dt6:D
7 5agv:B 393 371 0.2921 0.2646 0.2803 1.46e-32 5agu:A, 5agu:B, 5agv:A, 6fvn:A, 6fvn:B, 6fvn:C, 6fvn:D, 6fvo:A, 6fvo:B, 6fvo:C, 6fvo:D
8 6dly:B 384 386 0.2893 0.2682 0.2668 5.34e-30 6dly:A
9 8djq:B 390 362 0.2725 0.2487 0.2680 1.09e-29 8dj6:A, 8dj6:B, 8dj6:C, 8dj6:D, 8djq:A, 8djq:C, 8djq:D, 8dk9:A, 8dk9:B, 8dk9:C, 8dk9:D
10 5ah2:C 382 386 0.2978 0.2775 0.2746 7.40e-29 5ah2:A, 5ah2:B, 5ah2:D, 5ah4:A, 5ah4:B
11 6dj8:A 384 362 0.2022 0.1875 0.1989 4.63e-18 6dj8:B
12 5fxt:A 374 349 0.2275 0.2166 0.2321 6.03e-16 5frq:A, 5frq:D, 5fve:A, 5g48:A, 5g48:B, 5g4q:B
13 4o98:B 307 61 0.0730 0.0847 0.4262 0.15 4o98:A
14 8ro0:J 574 66 0.0590 0.0366 0.3182 1.8 8ro1:J
15 3mwb:A 306 156 0.1011 0.1176 0.2308 3.8 3mwb:B
16 3bh6:B 314 77 0.0618 0.0701 0.2857 4.2 3bh7:B
17 3aoe:B 424 46 0.0478 0.0401 0.3696 9.2 3aoe:A, 3aog:A, 3aog:E, 3aog:B, 3aog:D, 3aog:C, 3aog:F, 3aog:G, 3aog:I, 3aog:H, 3aog:J, 3aog:L, 3aog:K
18 2xig:C 150 91 0.0646 0.1533 0.2527 9.8 2xig:A, 2xig:B, 2xig:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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