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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWKEHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQ
EFFEIWLKLFEESLNIVYNEEMKNVILQRAQMIASHFQNMLYKYGGH

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ig3:A 127 127 1.0000 1.0000 1.0000 4.59e-92 2ig3:B
2 1ux8:A 118 119 0.2441 0.2627 0.2605 1.37e-06
3 2bkm:A 128 121 0.2520 0.2500 0.2645 8.61e-04 2bkm:B
4 5v3u:A 131 132 0.2598 0.2519 0.2500 0.013 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
5 4xdi:A 127 63 0.1339 0.1339 0.2698 0.017 6cii:A, 4xdi:B
6 2xyk:B 130 124 0.2362 0.2308 0.2419 0.12 2xyk:A
7 1s56:B 135 65 0.1575 0.1481 0.3077 0.33 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
8 7ney:A 497 51 0.1417 0.0362 0.3529 1.2 7ney:B, 7nf0:A, 7nf0:B, 7nf1:A, 7nf1:B, 7nf2:A, 7nf2:B
9 4ihc:B 395 46 0.1339 0.0430 0.3696 2.3 4ihc:C, 4ihc:D, 4ihc:E, 4ihc:F, 4ihc:H
10 3jb9:c 300 27 0.0945 0.0400 0.4444 2.6
11 3twb:C 417 46 0.1339 0.0408 0.3696 2.9 4ihc:A, 4ihc:G, 3twa:A, 3twa:B, 3twa:C, 3twa:D, 3twa:E, 3twb:A, 3twb:B, 3twb:D, 3twb:E
12 7mop:A 2445 25 0.0866 0.0045 0.4400 4.1 6fyh:A, 6pfl:A, 6pfl:B, 8r7o:A, 8r7o:C, 8rd0:C, 8rd0:D, 8rd1:A, 8rd1:C, 8rd1:D, 8rd7:D, 6xz1:A
13 4bih:A 172 26 0.0866 0.0640 0.4231 4.4
14 7qep:MD 170 28 0.0945 0.0706 0.4286 4.9
15 4gir:B 411 32 0.1102 0.0341 0.4375 5.9 4ggh:A, 4ggh:B, 4ggh:C, 4ggh:D, 4gir:A, 4gir:C, 4gir:D, 4gis:A, 4gis:B
16 4ag5:A 374 77 0.1732 0.0588 0.2857 7.3 4ag5:B, 4ag5:C
17 8fru:G 197 44 0.1181 0.0761 0.3409 9.9 8br8:LI, 8brm:LI, 8bsi:LI, 8bsj:LI, 8btd:LI, 8btr:LI, 7pwg:G, 7pwo:G2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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