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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVR
ASNPQKV

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ec6:A 87 87 1.0000 1.0000 1.0000 2.25e-58 1ec6:B
2 2p2r:A 73 71 0.3333 0.3973 0.4085 2.52e-13
3 2anr:A 155 70 0.2989 0.1677 0.3714 2.19e-11 2ann:A
4 2anr:A 155 69 0.3103 0.1742 0.3913 2.51e-07 2ann:A
5 1zzi:A 82 68 0.2989 0.3171 0.3824 4.02e-10 7cre:A, 1j5k:A, 1zzi:B, 1zzj:A, 1zzj:B
6 8coo:A 191 65 0.2529 0.1152 0.3385 2.85e-04 2n8l:A, 2n8m:A
7 8coo:A 191 35 0.1724 0.0785 0.4286 0.008 2n8l:A, 2n8m:A
8 1j4w:A 145 65 0.2299 0.1379 0.3077 6.14e-04 6y2c:A
9 1j4w:A 145 70 0.2299 0.1379 0.2857 0.001 6y2c:A
10 6y2c:B 84 71 0.2414 0.2500 0.2958 7.06e-04
11 7yey:A 162 59 0.2299 0.1235 0.3390 0.002 7vkl:A
12 7yey:A 162 76 0.2414 0.1296 0.2763 0.020 7vkl:A
13 3vke:A 76 69 0.2529 0.2895 0.3188 0.031 2axy:B, 2axy:D, 2pqu:C, 2pqu:B, 2py9:B, 2py9:C, 3vke:B, 3vke:C, 3vke:D, 1ztg:A, 1ztg:D, 1ztg:B, 1ztg:C
14 4b8t:A 106 67 0.1954 0.1604 0.2537 0.032
15 2axy:A 72 27 0.1494 0.1806 0.4815 0.14 2axy:C, 2pqu:A, 2py9:A
16 4aim:A 698 36 0.1379 0.0172 0.3333 0.45 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
17 4wal:A 127 31 0.1494 0.1024 0.4194 0.51 4wan:A, 4wan:C, 4wan:E, 4wan:G
18 4jvy:A 191 31 0.1494 0.0681 0.4194 1.4 4jvy:B, 2mjh:A
19 4cw5:B 438 19 0.1149 0.0228 0.5263 2.2 4cw5:A
20 6e9b:D 368 67 0.2069 0.0489 0.2687 5.7
21 1k1g:A 122 44 0.1839 0.1311 0.3636 6.9
22 4jvh:A 176 31 0.1494 0.0739 0.4194 8.6
23 3aev:B 177 65 0.1954 0.0960 0.2615 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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