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BioLiP
>protein
MKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVR
ASNP

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ec6:A 87 84 1.0000 0.9655 1.0000 2.66e-56 1ec6:B
2 2p2r:A 73 71 0.3452 0.3973 0.4085 2.23e-13
3 2anr:A 155 70 0.3095 0.1677 0.3714 2.16e-11 2ann:A
4 2anr:A 155 69 0.3214 0.1742 0.3913 1.88e-07 2ann:A
5 1zzi:A 82 68 0.3095 0.3171 0.3824 3.43e-10 7cre:A, 1j5k:A, 1zzi:B, 1zzj:A, 1zzj:B
6 8coo:A 191 65 0.2619 0.1152 0.3385 2.42e-04 2n8l:A, 2n8m:A
7 8coo:A 191 35 0.1786 0.0785 0.4286 0.007 2n8l:A, 2n8m:A
8 1j4w:A 145 65 0.2381 0.1379 0.3077 5.22e-04 6y2c:A
9 1j4w:A 145 70 0.2381 0.1379 0.2857 0.001 6y2c:A
10 6y2c:B 84 71 0.2500 0.2500 0.2958 6.68e-04
11 7yey:A 162 59 0.2381 0.1235 0.3390 0.002 7vkl:A
12 7yey:A 162 76 0.2500 0.1296 0.2763 0.017 7vkl:A
13 4b8t:A 106 67 0.2024 0.1604 0.2537 0.025
14 3vke:A 76 69 0.2619 0.2895 0.3188 0.028 2axy:B, 2axy:D, 2pqu:C, 2pqu:B, 2py9:B, 2py9:C, 3vke:B, 3vke:C, 3vke:D, 1ztg:A, 1ztg:D, 1ztg:B, 1ztg:C
15 2axy:A 72 27 0.1548 0.1806 0.4815 0.13 2axy:C, 2pqu:A, 2py9:A
16 4aim:A 698 36 0.1429 0.0172 0.3333 0.40 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
17 4wal:A 127 31 0.1548 0.1024 0.4194 0.49 4wan:A, 4wan:C, 4wan:E, 4wan:G
18 4jvy:A 191 31 0.1548 0.0681 0.4194 1.4 4jvy:B, 2mjh:A
19 4cw5:B 438 19 0.1190 0.0228 0.5263 2.0 4cw5:A
20 6e9b:D 368 67 0.2143 0.0489 0.2687 4.7
21 1k1g:A 122 44 0.1905 0.1311 0.3636 6.6
22 3aev:B 177 65 0.2024 0.0960 0.2615 7.1
23 4jvh:A 176 31 0.1548 0.0739 0.4194 9.0
24 1b74:A 252 25 0.0952 0.0317 0.3200 9.3
25 1cg2:A 389 20 0.1190 0.0257 0.5000 9.8 1cg2:B, 1cg2:C, 1cg2:D, 6xj5:A, 6xj5:B, 6xj5:C, 6xj5:D, 6xj5:E, 6xj5:F, 6xj5:G, 6xj5:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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