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BioLiP
>protein
MKEKIRKKILLAPEEPGVFIFKNKGVPIYIGKAKRLSNRLRSYLNPQTEKVFRIGEEADELETIVVMNEREAFILEANLI
KKYRPKYNVR

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yd2:A 90 90 1.0000 1.0000 1.0000 8.33e-60 1yd0:A, 1yd1:A, 1yd3:A, 1yd4:A, 1yd5:A
2 7uws:E 422 31 0.1444 0.0308 0.4194 1.5 6bjy:A, 6bjy:B, 6bjy:C, 6bjy:D, 6bjy:E, 2gic:A, 2gic:B, 2gic:C, 2gic:D, 2gic:E, 3hhz:K, 3hhz:L, 3hhz:M, 3hhz:N, 3hhz:O, 3pmk:A, 3pmk:D, 3pmk:B, 3pmk:C, 3ptx:A, 3ptx:B, 3ptx:C, 3ptx:D, 3ptx:E, 3pu0:A, 3pu0:B, 3pu0:C, 3pu0:D, 3pu0:E, 3pu1:A, 3pu1:B, 3pu1:C, 3pu1:D, 3pu1:E, 3pu4:A, 3pu4:B, 3pu4:C, 3pu4:D, 3pu4:E, 5uk4:P, 5uk4:Q, 5uk4:N, 5uk4:M, 5uk4:O, 5uk4:R, 5uk4:S, 5uk4:T, 5uk4:K, 5uk4:L, 5uk4:B, 5uk4:C, 5uk4:D, 5uk4:E, 5uk4:F, 5uk4:G, 5uk4:H, 5uk4:I, 5uk4:J, 5uk4:A, 5ukb:D, 5ukb:C, 5ukb:B, 5ukb:A, 5ukb:E, 7umk:A, 7uws:A, 7uws:B, 7uws:C, 7uws:D, 7uws:F, 2wyy:A, 2wyy:C, 2wyy:D, 2wyy:F, 2wyy:H, 2wyy:I, 2wyy:J, 2wyy:K, 2wyy:L, 2wyy:M
3 7uws:G 382 31 0.1444 0.0340 0.4194 1.6 7uml:A
4 6a4r:A 235 62 0.2222 0.0851 0.3226 2.0 6a4r:B
5 6wby:A 1250 31 0.1667 0.0120 0.4839 2.5
6 6w98:A 1312 31 0.1667 0.0114 0.4839 2.5 6wbx:A
7 7brn:A 133 23 0.1333 0.0902 0.5217 3.0 3vxw:A, 6wy6:A, 6wy6:B, 2zpn:A, 2zpn:D, 2zpn:B, 2zpn:C
8 4dxl:A 304 42 0.1778 0.0526 0.3810 5.4 4ed4:A, 4emd:A
9 4ohf:B 458 24 0.1222 0.0240 0.4583 6.2 4ohf:A, 4ohf:C, 4ohf:D
10 3wir:A 756 45 0.1889 0.0225 0.3778 6.6 3wiq:A, 3wir:B, 3wir:C, 3wir:D
11 7sol:A 1011 27 0.1222 0.0109 0.4074 7.9 7pvn:A
12 7pvn:B 990 27 0.1222 0.0111 0.4074 8.1 7sol:C
13 6h8c:A 116 23 0.1333 0.1034 0.5217 8.6
14 5vk4:B 330 33 0.1222 0.0333 0.3333 9.9 5vk4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218