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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKEIKGILESITGFSIPLDNGEYALYPAGRHLRGAIGYIAFNLDLPISSKFLDFDFDDIIFRDLLPISKCGKIFYPEKNS
NSLKCPSCNEIYGSSVLRNIMARGLSYKEVIEGKKYRLSIIVKDEKYLNEMEAIIRYILSYGIYLGNKVSKGYGKFKIKE
YSIVDILVLLLSDAIEKDIVFSKKEISSSKFEIIRKRGKAKGDFGEIISL

The query sequence (length=210) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8yhd:G 234 235 0.9810 0.8803 0.8766 2.56e-132 8yhe:G, 8z4j:G, 8z4l:G, 8z99:G, 8z9c:G
2 8z9e:G 175 201 0.8238 0.9886 0.8607 1.24e-104
3 6tmf:W 56 23 0.0381 0.1429 0.3478 3.7 6skf:Az, 6skg:Az, 6th6:Az
4 3pr8:A 218 48 0.0810 0.0780 0.3542 6.5 3pr8:B, 3pr8:C, 3pr8:D
5 4c91:A 811 90 0.1333 0.0345 0.3111 6.8
6 6sw9:C 61 27 0.0381 0.1311 0.2963 8.1 6swc:C, 6swd:C, 7zag:C, 7zah:C, 7zai:C, 7zhg:C
7 7rcf:A 290 37 0.0524 0.0379 0.2973 9.1 7rcc:D, 7rcc:A, 7rcc:G, 7rcd:A, 7rce:A, 7rcg:A
8 5u75:A 144 26 0.0571 0.0833 0.4615 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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