Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ysa:C 57 56 0.9825 0.9825 1.0000 9.79e-34 1dgc:A, 2dgc:A, 1ysa:D
2 1llm:C 87 56 0.6491 0.4253 0.6607 1.00e-14 1llm:D
3 3i5c:B 198 30 0.5263 0.1515 1.0000 7.82e-14 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
4 3crp:B 34 32 0.4737 0.7941 0.8438 7.76e-13 2b1f:A, 2b1f:C, 3crp:C
5 5apw:B 64 29 0.4912 0.4375 0.9655 3.62e-12
6 5apw:B 64 31 0.4737 0.4219 0.8710 8.71e-12
7 2bni:C 34 32 0.3860 0.6471 0.6875 7.89e-11 2bni:D, 1u9h:A
8 1uo4:B 31 31 0.4035 0.7419 0.7419 1.25e-10 1uo5:A
9 1fav:A 78 28 0.3509 0.2564 0.7143 2.19e-10 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
10 1uny:B 30 30 0.3860 0.7333 0.7333 2.61e-09
11 1czq:A 45 30 0.3333 0.4222 0.6333 2.28e-07 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
12 4hjb:C 30 31 0.3333 0.6333 0.6129 3.07e-06 4hjb:D
13 2r2v:C 33 32 0.3158 0.5455 0.5625 5.08e-06 2r2v:D
14 5vpe:D 67 50 0.3684 0.3134 0.4200 3.63e-04 5vpe:B, 5vpf:B, 5vpf:D
15 3w8v:A 32 32 0.3509 0.6250 0.6250 5.48e-04 3w8v:B, 3w92:A, 3w92:B, 3w92:C, 3w93:A, 3w93:B, 3w93:C
16 5t01:A 62 50 0.3684 0.3387 0.4200 7.46e-04 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
17 1t2k:D 61 52 0.3860 0.3607 0.4231 0.017
18 8k8c:A 60 47 0.3158 0.3000 0.3830 0.86 8k8c:B, 1nwq:A, 1nwq:C
19 8kgn:A 1190 27 0.1930 0.0092 0.4074 1.5 8j9v:A, 8j9v:B, 8j9w:B, 8j9w:A, 8j9x:A, 8j9x:B, 8ja1:A, 8ja2:A, 8kgm:A, 8kgm:B, 8kgn:B, 8kgq:A, 8kgq:B, 8kgr:A, 8kgr:B, 8kgs:A, 8kgt:A, 8wwo:A, 8wwo:B, 8wwo:C, 8wwo:D, 8xrf:A, 8xrf:B, 8xrg:A, 8xrh:A, 8xri:A, 8xri:B, 8yge:A, 8yge:B
20 1h88:B 71 49 0.2982 0.2394 0.3469 1.8 2e42:A, 2e42:B, 2e43:A, 2e43:B, 1gtw:A, 1gtw:B, 1gu4:A, 1gu4:B, 1gu5:A, 1gu5:B, 1h88:A, 1h89:A, 1h89:B, 1h8a:A, 1h8a:B, 1hjb:A, 1hjb:B, 1hjb:D, 1hjb:E, 1io4:A, 1io4:B, 8k8d:A, 8k8d:B, 7l4v:A, 7l4v:B, 6mg1:A, 6mg1:B, 6mg2:A, 6mg2:B, 6mg3:A, 6mg3:B, 7upz:A, 7upz:B
21 4oo8:A 1301 35 0.2456 0.0108 0.4000 2.3 4zt0:C
22 8k86:A 63 49 0.3333 0.3016 0.3878 4.0 8k86:B, 8k8a:A, 8k8a:B
23 4v61:AT 102 62 0.3684 0.2059 0.3387 5.4
24 6o4d:B 510 39 0.2456 0.0275 0.3590 5.7 2j6l:A, 2j6l:B, 2j6l:C, 2j6l:D, 2j6l:E, 2j6l:F, 2j6l:G, 2j6l:H, 6o4b:A, 6o4b:B, 6o4b:C, 6o4b:D, 6o4b:E, 6o4b:F, 6o4b:G, 6o4b:H, 6o4c:A, 6o4c:B, 6o4c:C, 6o4c:D, 6o4c:E, 6o4c:F, 6o4c:G, 6o4c:H, 6o4d:A, 6o4d:C, 6o4d:D, 6o4d:E, 6o4d:F, 6o4d:G, 6o4d:H, 6o4e:A, 6o4e:B, 6o4e:C, 6o4e:D, 6o4e:E, 6o4e:F, 6o4e:G, 6o4e:H, 6o4f:B, 6o4f:E, 6o4f:F, 6o4g:B, 6o4g:E, 6o4g:G, 6o4g:H, 6o4h:A, 6o4h:B, 6o4h:C, 6o4h:D, 6o4h:E, 6o4h:F, 6o4h:G, 6o4h:H, 6o4i:A, 6o4i:B, 6o4i:C, 6o4i:D, 6o4i:E, 6o4i:F, 6o4i:G, 6o4i:H, 6o4k:A, 6o4k:B, 6o4k:C, 6o4k:D, 6o4k:E, 6o4k:F, 6o4k:G, 6o4k:H, 6o4l:A, 6o4l:B, 6o4l:C, 6o4l:D, 6u2x:A, 6u2x:B, 6u2x:C, 6u2x:D, 6u2x:E, 6u2x:F, 6u2x:G, 6u2x:H, 6v0z:A, 6v0z:B, 6v0z:C, 6v0z:D, 6v0z:E, 6v0z:F, 6v0z:G, 6v0z:H, 4x0t:A, 4x0t:B, 4x0t:C, 4x0t:D, 4x0u:A, 4x0u:B, 4x0u:C, 4x0u:D, 4zuk:A, 4zuk:B, 4zuk:C, 4zuk:D, 4zuk:E, 4zuk:F, 4zuk:G, 4zuk:H, 4zul:A, 4zul:B, 4zul:C, 4zul:D, 4zul:E, 4zul:F, 4zul:G, 4zul:H, 4zvy:B
25 3ebe:C 177 26 0.1754 0.0565 0.3846 6.6 3ebe:A, 3ebe:B, 3h15:A
26 4u8u:O 213 21 0.1754 0.0469 0.4762 7.2 4u8u:s, 4u8u:d
27 7x5e:B 106 50 0.2982 0.1604 0.3400 7.8 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
28 3hf0:A 30 16 0.1754 0.3333 0.6250 8.8
29 8rd8:Lg 137 25 0.1930 0.0803 0.4400 9.7 8rdv:Lg, 8rdw:Lg

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218