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BioLiP
>protein
MKDFTTYLSTAPVVGLGWAIFTSGLLIEINRFFPDPLVFSF

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qph:J 41 41 1.0000 1.0000 1.0000 2.41e-24 6rhz:J, 6sl5:J, 6yxr:J
2 7d0j:J 41 41 0.8049 0.8049 0.8049 9.16e-19 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
3 8cmo:J 40 40 0.7805 0.8000 0.8000 4.88e-18
4 7a4p:J 41 41 0.6829 0.6829 0.6829 5.49e-14 6zzx:J, 6zzy:J
5 6igz:J 41 41 0.5610 0.5610 0.5610 5.83e-13
6 8htu:J 41 39 0.6341 0.6341 0.6667 4.80e-12 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
7 6l4u:J 41 37 0.5854 0.5854 0.6486 1.98e-11
8 5l8r:J 42 41 0.6098 0.5952 0.6098 2.00e-11 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
9 4fe1:J 41 37 0.5610 0.5610 0.6216 6.08e-11 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
10 7yca:J 41 39 0.5610 0.5610 0.5897 6.42e-11
11 8bcv:J 43 41 0.5854 0.5581 0.5854 5.51e-10 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
12 7blz:J 38 37 0.5122 0.5526 0.5676 6.04e-10 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
13 7dr0:J 37 36 0.5854 0.6486 0.6667 6.20e-10 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
14 7y5e:JN 38 38 0.5122 0.5526 0.5526 1.07e-09 7y5e:J2, 7y7a:J7, 7y7a:Jo
15 6vpv:J 39 34 0.5122 0.5385 0.6176 3.89e-09 6vpv:j, 6vpv:8
16 8wm6:J 42 38 0.5122 0.5000 0.5526 2.67e-08 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
17 6kif:J 41 37 0.4634 0.4634 0.5135 1.52e-07 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
18 7coy:aJ 35 33 0.4390 0.5143 0.5455 4.93e-07 7coy:bJ, 7coy:cJ
19 6k61:J 45 29 0.4146 0.3778 0.5862 7.14e-07 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
20 8jw0:j 70 29 0.4634 0.2714 0.6552 7.20e-06
21 4l6v:F 125 35 0.4146 0.1360 0.4857 2.21e-05 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
22 7s3d:J 41 34 0.3659 0.3659 0.4412 3.49e-04 7s3d:S, 7s3d:j
23 7qco:q 37 31 0.3659 0.4054 0.4839 0.005 7qco:j
24 8jze:j 98 18 0.3171 0.1327 0.7222 0.070 8jzf:j
25 8jjr:j 99 19 0.2927 0.1212 0.6316 0.18
26 7ee5:E 120 24 0.2195 0.0750 0.3750 0.40 7ee4:A, 7ee4:D, 7ee4:E, 7ee5:A, 7ee5:D
27 3cxm:A 242 23 0.2195 0.0372 0.3913 1.3
28 5guh:A 759 22 0.2195 0.0119 0.4091 2.0
29 6rag:B 575 34 0.3415 0.0243 0.4118 3.2 6raf:B, 6rah:B, 6rai:B, 6raj:B, 6rak:B, 6ral:B, 6ram:B
30 8eg0:A 230 28 0.2439 0.0435 0.3571 5.5 3ckk:A, 8cth:A, 8cti:A, 8d59:A, 8d5b:A, 8d9l:A, 7ogj:A, 7ogj:B, 7pl1:A
31 5kzd:A 284 40 0.2683 0.0387 0.2750 6.8 5kzd:B, 5kzd:C, 5kzd:D
32 3ibz:A 177 14 0.2195 0.0508 0.6429 8.5
33 2ohh:A 403 17 0.1707 0.0174 0.4118 9.5 2ohh:B, 2ohh:D, 2ohh:E, 2ohi:A, 2ohi:B, 2ohi:D, 2ohi:E, 2ohi:G, 2ohi:H, 2ohi:I, 2ohi:J, 2ohj:A, 2ohj:B, 2ohj:D, 2ohj:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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