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BioLiP
>protein
MKAPRRQLTYVTDLNKCIGCQTCTVACKKLWTTGPGQDFMYWRNVETAPGLGYPRNWQTKGGGYKNGELQKGKIPPMIDY
GIPFEFDYAGRLFEGKPGRVRPSPTPRSAPNWDEDQGAGEYPNNSFFYLPRMCNHCTKPACLEACPNEAIYKREQDGIVV
IHQDKCKGAQACVQSCPYAKPYFNPLTNKANKCIGCFPRIEQGVAPACVAQCVGRAMHVGFVDDVNSSVYKLIKQYKVAL
PLHPEFGTEPNVFYVPPVLGPRIEMANGEPSTDPKIPLAQLEGLFGKQVRDVLAILQSEREKKMKGLASDLMDVLIGRRS
TDMMISPLT

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ch7:B 329 329 1.0000 1.0000 1.0000 0.0 5ch7:D, 5ch7:F, 5chc:B, 5chc:D, 5chc:F, 5e7o:B, 5e7o:D, 5e7o:F, 5e7o:H, 5e7o:J, 5e7o:L, 4ydd:B, 4ydd:D, 4ydd:F
2 2ivf:B 337 325 0.5289 0.5163 0.5354 2.86e-126
3 7b04:A 409 292 0.3647 0.2934 0.4110 4.19e-68 7b04:D, 7b04:G, 7b04:J, 7b04:M, 7b04:P, 7b04:S, 7b04:V
4 3egw:B 509 375 0.3921 0.2534 0.3440 1.69e-63 3ir5:B, 3ir6:B, 3ir7:B, 1q16:B, 1r27:B, 1r27:D, 1siw:B, 1y4z:B, 1y5i:B, 1y5l:B, 1y5n:B
5 2vpw:F 193 144 0.1611 0.2746 0.3681 2.35e-24 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
6 6cz7:B 234 185 0.1611 0.2265 0.2865 5.81e-20 6cz7:D, 6cz8:D, 6cz8:B, 6cz9:B, 6cz9:D, 6cza:B, 6cza:D
7 1kqf:B 289 184 0.1763 0.2007 0.3152 2.98e-16 1kqg:B
8 4v4c:B 274 145 0.1429 0.1715 0.3241 1.89e-13 4v4c:D, 4v4c:F, 4v4c:H, 4v4c:J, 4v4c:L, 4v4c:N, 4v4c:P, 4v4c:R, 4v4c:T, 4v4c:V, 4v4c:X, 4v4d:B, 4v4d:D, 4v4d:F, 4v4d:H, 4v4d:J, 4v4d:L, 4v4d:N, 4v4d:P, 4v4d:R, 4v4d:T, 4v4d:V, 4v4d:X, 4v4e:B, 4v4e:D, 4v4e:F, 4v4e:H, 4v4e:J, 4v4e:L, 4v4e:N, 4v4e:P, 4v4e:R, 4v4e:T, 4v4e:V, 4v4e:X
9 8bqg:B 214 236 0.1702 0.2617 0.2373 3.07e-12 8bqh:B, 8bqi:B, 8bqj:B, 8bqk:B, 8bql:B, 8cm4:B, 8cm4:D, 8cm5:B, 8cm5:D, 8cm5:L, 8cm5:S, 8cm6:B, 8cm6:D, 8cm7:B, 8rc8:B, 8rc9:B, 8rca:B, 8rcb:B, 8rcc:B, 8rcg:B, 6sdr:B, 6sdv:B, 7z5o:BBB
10 1h0h:B 214 120 0.0973 0.1495 0.2667 1.11e-07 1h0h:L
11 8c0z:C 158 68 0.0699 0.1456 0.3382 4.32e-07 8c0z:F
12 7qv7:A 174 162 0.1429 0.2701 0.2901 3.06e-06 7qv7:G
13 6x6u:B 167 53 0.0608 0.1198 0.3774 8.10e-05 6x1o:B, 6x1o:D, 6x6u:D
14 6btm:B 948 288 0.2036 0.0707 0.2326 8.52e-05
15 8k9e:B 951 70 0.0699 0.0242 0.3286 0.005 8k9f:B, 8x2j:B
16 8k9e:B 951 16 0.0304 0.0105 0.6250 3.1 8k9f:B, 8x2j:B
17 6f0k:B 961 166 0.1125 0.0385 0.2229 0.012
18 6f0k:B 961 23 0.0395 0.0135 0.5652 0.22
19 7zc6:B 202 50 0.0486 0.0792 0.3200 0.013
20 7zc6:B 202 48 0.0578 0.0941 0.3958 8.5
21 7z0s:B 170 65 0.0638 0.1235 0.3231 0.020 7z0t:B
22 8a8o:D 102 37 0.0365 0.1176 0.3243 0.044 8a8o:C
23 7qv7:B 183 57 0.0608 0.1093 0.3509 0.049 7qv7:C, 7qv7:J, 7qv7:N, 7qv7:P, 7qv7:X
24 2v2k:A 104 58 0.0517 0.1635 0.2931 0.079 2v2k:B
25 6lod:B 929 68 0.0517 0.0183 0.2500 0.32 6loe:B
26 1clf:A 55 42 0.0486 0.2909 0.3810 0.36
27 1a6l:A 106 51 0.0517 0.1604 0.3333 0.58 1axq:A, 1b0t:A, 1b0v:A, 1b0v:B, 1b0v:C, 1b0v:D, 1d3w:A, 1f5b:A, 1f5c:A, 1fd2:A, 1fda:A, 1fdb:A, 1fdd:A, 2fd2:A, 5fd1:A, 6fd1:A, 6fdr:A, 7fd1:A, 7fdr:A, 1fer:A, 1ff2:A, 1frh:A, 1fri:A, 1frj:A, 1frk:A, 1frl:A, 1frm:A, 1frx:A, 1ftc:A, 1ftc:B, 1g3o:A, 1g6b:A, 1gao:A, 1gao:B, 1gao:C, 1gao:D, 1pc4:A, 1pc5:A
28 8jjr:c 86 42 0.0456 0.1744 0.3571 0.62 8jw0:c, 8jze:c, 8jzf:c
29 5t61:L 348 54 0.0517 0.0489 0.3148 1.4 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
30 7prj:A 55 38 0.0456 0.2727 0.3947 1.4
31 1h98:A 77 43 0.0486 0.2078 0.3721 1.7
32 5b4x:B 479 120 0.0973 0.0668 0.2667 2.3 3a7q:B, 5b4x:D, 5b4y:B
33 3mm5:B 363 60 0.0486 0.0441 0.2667 2.5 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
34 7bkd:A 664 51 0.0486 0.0241 0.3137 2.6 7bkb:A, 7bkb:a, 7bkc:A, 7bkc:a, 7bkd:a, 7bke:A, 7bke:a
35 1dwl:A 59 30 0.0304 0.1695 0.3333 2.7
36 1dwl:A 59 19 0.0243 0.1356 0.4211 9.3
37 4xdd:A 582 98 0.0760 0.0430 0.2551 2.8 8aio:A, 8aio:B, 8aj6:A, 8aj6:B, 8aln:A, 8aln:B, 8ap2:A, 8ap2:B, 5byq:A, 5byq:B, 5byr:A, 5byr:B, 5bys:A, 5bys:B, 1c4a:A, 1c4c:A, 3c8y:A, 8cjy:A, 8cjy:B, 1feh:A, 6gly:A, 6gly:B, 6glz:A, 6glz:B, 6gm0:A, 6gm0:B, 6gm1:A, 6gm1:B, 6gm2:A, 6gm2:B, 6gm3:A, 6gm3:B, 6gm4:A, 6gm4:B, 6gm8:A, 6gm8:B, 6h63:A, 6h63:B, 5la3:A, 5la3:B, 6n59:A, 6n6p:A, 6nac:A, 5oef:A, 5oef:B, 8pvm:A, 8pvm:B, 7qhf:A, 7qhf:B, 8qm3:A, 8qm3:B, 4xdc:A, 4xdc:B, 4xdd:B, 6yf4:A, 6yf4:B
38 8a6t:B 630 53 0.0608 0.0317 0.3774 3.0 8a6t:E, 8bew:B, 8bew:E
39 8ahx:B 113 45 0.0486 0.1416 0.3556 3.2 8rb8:B, 8rb9:B, 8rbq:B
40 5t5i:P 81 66 0.0608 0.2469 0.3030 3.6 5t5i:G, 5t5m:G, 5t61:E, 5t61:K, 5t61:Q, 5t61:W, 5t61:c, 5t61:i, 5t61:o, 5t61:u
41 8r3r:A 658 52 0.0486 0.0243 0.3077 3.8 8r3r:B, 8r3r:C, 8r3r:D
42 8cip:A 665 45 0.0517 0.0256 0.3778 4.9 8cip:B, 8cip:C, 8cip:D
43 3cf4:A 766 137 0.1094 0.0470 0.2628 5.6
44 7p8n:B 613 90 0.0729 0.0392 0.2667 6.2 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B
45 2x24:B 667 39 0.0395 0.0195 0.3333 7.3 2x24:A
46 1bc6:A 77 50 0.0456 0.1948 0.3000 7.3 1bd6:A, 1bqx:A, 1bwe:A
47 3bk7:A 593 54 0.0517 0.0287 0.3148 7.9 3j15:B, 5lw7:B, 1yqt:A, 5yv5:A
48 8e9i:I 166 55 0.0608 0.1205 0.3636 9.5 8e9g:I, 8e9h:I
49 1rgv:A 80 41 0.0547 0.2250 0.4390 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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