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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKAKEIIEFIETFAPKDLAIEGDNIGLQVGDNLDKEIKKLGIALDPSLSVIKKAEKEGVDFLFTHHPLLKDPIRNFTGVI
YKKLKILMENDIILYSAHTNLDICKNGLNDALAELYNLENPKPLYDNGLGRVGIFKGSFEEFLEITKKYIHKNPIVVKSK
EVDDNFKLAVLSGYGLSQSSIKYVAEKADVYLSGDLTHHSKILAEELGLVVVDATHYSTEVFGLKKFKEFLSSNLDLEII
SLDF

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3wse:A 248 244 1.0000 0.9839 1.0000 1.30e-175 3wsd:A, 3wsd:B, 3wsd:C, 3wsd:D, 3wsd:E, 3wsd:F, 3wse:B, 3wse:C, 3wse:D, 3wse:E, 3wse:F, 3wsf:A, 3wsf:B, 3wsf:C, 3wsf:D, 3wsf:E, 3wsf:F, 3wsg:A, 3wsg:B, 3wsg:C, 3wsg:D, 3wsg:E, 3wsg:F, 3wsh:A, 3wsh:B, 3wsh:C, 3wsh:D, 3wsh:E, 3wsh:F, 3wsh:G, 3wsh:H, 3wsh:I, 3wsh:J, 3wsh:K, 3wsh:L, 3wsi:A, 3wsi:B, 3wsi:C, 3wsi:D, 3wsi:E, 3wsi:F
2 2gx8:C 364 136 0.2254 0.1511 0.4044 1.92e-23 2gx8:A, 2gx8:B
3 2gx8:C 364 94 0.1311 0.0879 0.3404 0.004 2gx8:A, 2gx8:B
4 3lnl:A 307 296 0.2992 0.2378 0.2466 6.98e-16 2nyd:A
5 3lnl:B 349 124 0.1721 0.1203 0.3387 9.99e-13 2nyd:B
6 3lnl:B 349 60 0.0820 0.0573 0.3333 0.007 2nyd:B
7 1nmo:A 247 243 0.2459 0.2429 0.2469 1.38e-11 1nmo:B, 1nmo:C, 1nmo:D, 1nmo:E, 1nmo:F, 1nmp:A, 1nmp:B, 1nmp:C, 1nmp:D, 1nmp:E, 1nmp:F
8 6vjb:A 1346 82 0.1107 0.0201 0.3293 0.022
9 5xxz:B 1310 82 0.1107 0.0206 0.3293 0.023
10 5xya:A 1358 82 0.1107 0.0199 0.3293 0.024 5xxz:A
11 7edd:A 1394 82 0.1107 0.0194 0.3293 0.024 5xyr:A
12 6pv4:C 608 61 0.0779 0.0312 0.3115 0.97 6pv4:A, 6pv4:B, 6pv4:D
13 6mzm:B 968 34 0.0492 0.0124 0.3529 2.2 7egd:B, 7egh:B, 5fur:I
14 5el2:A 125 53 0.0861 0.1680 0.3962 3.9 5el2:B, 4fqt:A, 4fqt:B, 3n7h:A, 3n7h:B, 3ogn:A, 3ogn:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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