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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKAIPPKIWFETQLKGSGLDKKFQIDELIETQSSVRVFANKKYLPDTETINEALTKVTAVNVSGDKSGYFQNGLPFPNEA
GYFEKIPVGHPELLSPIERLTGSKKIVSSHSLVTASGGYPLTNPLLPYRKPIRVSIFSLAGPSFENNYLHYRLFLLDSVQ
KIIDSPLFSHLHDGLPIQFDEAKKELGEYDTNKLMARIRLGFPYLARFSSGGFYPSFSKSNAIIFLSEAYFRYQLEDVSL
LLASVNQTGKETGKAALLKATAVGMGFFAKIDCGYDIQHIIFPYYLRAYKKLLSEHKFPWIAKIEFPIFNEIQQEQFDSI
FEDYDGPTKVYRSTRDVLEFREEEIEKYLPAAINPSDAFALTGNEWGYGSVESMIGNNSSIRFDQVHHMNPLILDPSHHV
EAQINKDHGVELT

The query sequence (length=413) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wbm:A 415 413 1.0000 0.9952 1.0000 0.0 7w3s:A, 7w3s:B, 7w3s:C, 7w3s:D, 7wbm:B
2 1im2:A 346 91 0.0702 0.0838 0.3187 0.71 1g3i:T, 1g41:A
3 1g3i:A 326 89 0.0678 0.0859 0.3146 0.85 1g3i:B, 1g3i:C, 1g3i:D, 1g3i:E, 1g3i:F, 1g3i:S, 1g3i:U, 1g3i:V, 1g3i:W, 1g3i:X, 1kyi:A, 1kyi:B, 1kyi:C, 1kyi:D, 1kyi:E, 1kyi:F, 1kyi:S, 1kyi:T, 1kyi:U, 1kyi:V, 1kyi:W, 1kyi:X
4 1ofh:A 309 93 0.0702 0.0939 0.3118 1.9 1ofh:B, 1ofh:C, 1ofi:A, 1ofi:B, 1ofi:C
5 8xdo:A 242 50 0.0412 0.0702 0.3400 6.5 8uke:A, 8uke:C, 8uke:B, 8uke:D, 8uke:E, 8uke:F, 8xdo:B, 8xdp:A, 8xdp:B, 8xdq:A, 8xdq:B, 8xdr:A, 8xdr:B, 8xds:A, 8xds:B, 8xdt:A, 8xdt:B, 8xdu:A, 8xdu:B, 8xdv:A, 8xdv:B, 8xdy:A, 8xdy:B, 8xe0:A, 8xe0:B, 8xe2:A, 8xe2:B, 8xe2:C, 8xe2:D, 8xe3:A, 8xe3:B, 8xe4:A, 8xe4:B, 8xe4:C, 8xe4:D, 8xe5:A, 8xe5:B, 8xe5:C, 8xe5:D, 8z8o:A, 8z8o:B, 8z8o:C, 8z8o:D, 8z8p:A, 8z8p:B, 8z8p:C, 8z8p:D, 8z8r:A, 8z8r:B, 8z8r:C, 8z8r:D, 8z8s:A, 8z8s:B, 8zfw:A, 8zfw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218