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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKADAVKIADGVYWVGVLDWDIRMYHGYTLNGTTYNAYLVFGDDKVALIDNTYPGTSAQMWGRIKDACEKEGREFKIDVI
VQNHVEKDHSGALPEIHKKFPEAPIYCTEVAVEGLVKHFPSLKGAPFKVVKSLESIDLGGKTLTFLEAPLLHWPDSMFTL
YAEEGILFSNDAFGQHLCFTQRFDHEIPENILMDANQKFYANLITPLSKLVLKKFKEVIELGLLEKIKMIAPSHGQIWTD
PMKVIGAYQDFATGKCKDKVTIVYDTMHGSTQKMAHAFAEGIMSEGVDVKMYFLHNDERSEIVKDILDSKAFLLGAPTIY
DEPFPSVGDLIYYLKGLKFNRTGLKRLALAFGSMGGNGGGTKVLAEKLKECGFEVLDEYELYYVPTEDELEKCYNMGKRL
AVKVKEMK

The query sequence (length=408) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zk8:A 410 408 1.0000 0.9951 1.0000 0.0 6frm:A, 6frm:B, 6frm:C, 6frm:D, 6frm:E, 6frm:H, 6frm:F, 6frm:G, 6frn:A, 6frn:B, 6frn:C, 6frn:D, 6zk8:O, 6zlf:A, 6zlf:F, 6zlf:G, 6zlf:H, 6zlf:I, 6zlf:J, 6zlf:K, 6zlf:L
2 2ohh:A 403 405 0.6985 0.7072 0.7037 0.0 2ohh:B, 2ohh:D, 2ohh:E, 2ohi:A, 2ohi:B, 2ohi:D, 2ohi:E, 2ohi:G, 2ohi:H, 2ohi:I, 2ohi:J, 2ohj:A, 2ohj:B, 2ohj:D, 2ohj:E
3 1ycf:A 398 407 0.4167 0.4271 0.4177 8.08e-112 1ycf:B, 1ycf:C, 1ycf:D, 1ycg:A, 1ycg:B, 1ycg:C, 1ycg:D, 1ych:A, 1ych:B, 1ych:C, 1ych:D
4 7r0f:A 401 406 0.3627 0.3691 0.3645 3.20e-88 4d02:A, 6etb:A, 6etb:B, 5lld:A, 5lmc:A, 7r0f:B, 7r1h:A, 7r1h:B, 7r1j:A, 7r1j:B, 7r2o:A, 7r2o:B, 7r2p:A, 7r2p:B, 7r2r:A, 7r2r:B, 7r2s:A, 7r2s:B
5 1e5d:A 401 402 0.3554 0.3616 0.3607 7.27e-75 1e5d:B
6 2q9u:A 409 400 0.3260 0.3252 0.3325 8.28e-63 2q9u:B
7 4dik:A 402 362 0.2794 0.2836 0.3149 4.58e-32 4dik:B, 4dil:A, 4dil:B, 5v8s:A, 5v8s:B, 1vme:A, 1vme:B
8 5wid:A 144 148 0.1005 0.2847 0.2770 4.08e-11 5wid:B, 5wid:C
9 2fax:A 138 142 0.1005 0.2971 0.2887 3.19e-04 2fdx:A, 1fla:A, 1fld:A, 1fln:A, 2flv:A, 2fox:A, 1fvx:A, 2fvx:A, 3nll:A, 4nll:A, 5nll:A, 4nul:A, 5nul:A, 6nul:A, 5ull:A
10 4ad9:A 288 149 0.1103 0.1562 0.3020 0.002 4ad9:B, 4ad9:C, 4ad9:D, 4ad9:E, 4ad9:F
11 2fz5:A 137 149 0.0956 0.2847 0.2617 0.004
12 7ev5:A 209 167 0.1054 0.2057 0.2575 0.009
13 4awy:B 270 193 0.1005 0.1519 0.2124 0.014 4awz:A, 4awz:B, 4awz:C, 4ax0:B, 4ax1:B, 4p62:A
14 6r9n:A 233 207 0.1373 0.2403 0.2705 0.17 6r9n:B
15 6cin:B 1169 94 0.0588 0.0205 0.2553 0.18 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
16 3a4y:A 431 114 0.0735 0.0696 0.2632 0.25 3a4y:B, 3a4y:C, 3a4y:D, 2dkf:A, 2dkf:B, 2dkf:C, 2dkf:D, 3idz:A, 3idz:B, 3idz:C, 3idz:D, 3ie0:A, 3ie0:B, 3ie0:C, 3ie0:D, 3ie1:A, 3ie1:B, 3ie1:C, 3ie1:D, 3ie2:A, 3ie2:B, 3ie2:C, 3ie2:D, 3iek:A, 3iek:B, 3iek:C, 3iek:D, 3iel:A, 3iel:B, 3iel:C, 3iel:D, 3iem:A, 3iem:B, 3iem:D, 3iem:C
17 7y7u:A 288 55 0.0441 0.0625 0.3273 0.43 7y7u:B
18 2xr1:B 611 33 0.0319 0.0213 0.3939 0.45 2xr1:A
19 6c2c:A 299 79 0.0539 0.0736 0.2785 0.46 6c2c:B, 5hif:A, 5hif:B
20 3wqy:A 905 92 0.0686 0.0309 0.3043 0.54 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A
21 6qwo:B 253 108 0.0833 0.1344 0.3148 0.82 6qwo:A
22 5g0y:B 377 76 0.0613 0.0663 0.3289 0.90 5g0x:A, 5g0x:C, 5g0y:A, 5g10:A, 5g10:B, 5g11:A, 5g11:B, 5g12:A, 5g12:B, 5g13:A, 5g13:B, 5li3:A, 5li3:B
23 5t79:A 315 144 0.0980 0.1270 0.2778 1.2 3erp:A, 3erp:B
24 2ycb:B 635 32 0.0294 0.0189 0.3750 1.2 2ycb:A
25 2a5l:B 175 80 0.0441 0.1029 0.2250 1.4 2a5l:A, 1zwl:A
26 7q6n:D 204 117 0.0686 0.1373 0.2393 2.3 3b6i:A, 3b6i:B, 3b6j:A, 3b6j:B, 3b6k:A, 3b6k:B, 3b6m:A, 3b6m:B, 4dy4:A, 4dy4:C, 5f12:A, 5f12:B, 7q6n:A, 7q6n:B, 7q6n:C, 2r96:A, 2r96:C, 2r97:A, 2r97:C, 4yqe:A, 4yqe:B, 3zho:A, 3zho:B
27 8jnc:A 391 158 0.0956 0.0997 0.2468 2.3 8jnc:B, 8jno:A, 8jno:B, 8joo:A, 8joo:B, 8jua:A, 8jua:B
28 5fc9:A 95 38 0.0294 0.1263 0.3158 3.1 5fc9:B, 5fc9:C, 5fc9:D
29 7l0b:A 202 129 0.0784 0.1584 0.2481 4.2 7l0b:B, 7l0b:C, 7l0b:D
30 6hac:A 342 135 0.0833 0.0994 0.2519 5.0 6hae:A, 6hae:K, 6hav:A
31 4le6:A 257 62 0.0392 0.0623 0.2581 5.6 4le6:B, 4le6:C, 4le6:D, 4le6:E
32 3jsa:A 321 76 0.0490 0.0623 0.2632 5.7
33 4o98:B 307 62 0.0392 0.0521 0.2581 7.3 4o98:A
34 9c4g:k 144 55 0.0417 0.1181 0.3091 8.2 8crx:k, 8cvm:k
35 8aaf:a 848 41 0.0270 0.0130 0.2683 8.5 8agt:a, 8agu:a, 8agv:a, 8agw:a, 8agx:a, 8agz:a
36 4xww:A 545 31 0.0294 0.0220 0.3871 9.2 4xwt:A, 4xwt:B, 4xww:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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