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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIYGIGTDIVSLKRIIRLNKKFGQAFAGRILTPEELLEFPQAGKPVNYLAKRFAAKEAFAKAVGTGIRGAVSFRNIGIGH
DALGKPEFFYGPALSKWLEEQGISRVSLSMSDEEDTVLAFVVAEK

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5suv:A 126 125 1.0000 0.9921 1.0000 1.61e-88 5suv:B, 5suv:C
2 3qmn:E 127 125 0.4080 0.4016 0.4080 2.26e-27 3qmn:A, 3qmn:C, 3qmn:B, 3qmn:D, 3qmn:F, 3qmn:G, 3qmn:I, 3qmn:H, 3qmn:J, 3qmn:L, 3qmn:K, 3qmn:Q, 3qmn:M, 3qmn:N, 3qmn:O, 3qmn:P, 3qmn:R, 3qmn:S, 3qmn:U, 3qmn:T, 3qmn:V, 3qmn:W, 3qmn:X
3 5xuh:C 125 124 0.3920 0.3920 0.3952 8.62e-22 5vcb:c, 5vcb:B, 5vcb:M, 5vcb:U, 5vcb:S, 5xuh:B, 5xuh:A
4 2qg8:A 137 125 0.4000 0.3650 0.4000 2.93e-18
5 1f7l:A 118 87 0.3440 0.3644 0.4943 2.76e-16
6 7r49:B 121 131 0.4000 0.4132 0.3817 2.99e-16
7 3hyk:A 117 88 0.3200 0.3419 0.4545 6.60e-15 3hyk:B, 3hyk:C
8 1fth:A 117 127 0.3440 0.3675 0.3386 6.16e-11 1fth:B, 1fth:C
9 5xuk:A 115 119 0.3200 0.3478 0.3361 1.10e-07
10 3nfd:E 139 129 0.2880 0.2590 0.2791 0.005 3nfd:A, 3nfd:B, 3nfd:C, 3nfd:D, 3nfd:F
11 6jq8:A 225 45 0.1360 0.0756 0.3778 0.084
12 2jbz:A 124 123 0.2960 0.2984 0.3008 1.1 2wdo:A, 2wds:A, 2wdy:A
13 6ezn:F 650 61 0.1280 0.0246 0.2623 1.2 8agb:A, 8age:A, 6c26:A, 7oci:F
14 4v61:BD 227 66 0.2000 0.1101 0.3788 3.8
15 8agc:A 697 43 0.1040 0.0187 0.3023 5.6
16 3ej2:A 182 55 0.1280 0.0879 0.2909 5.8 3eiy:A, 3ej0:A
17 6t8y:BBB 375 21 0.0880 0.0293 0.5238 6.6 6t8y:AAA, 6t8y:CCC, 6t8y:DDD, 6t8z:AAA, 6t8z:BBB, 6t8z:CCC, 6t8z:DDD, 6t92:AAA, 6t92:BBB, 6t92:CCC, 6t92:DDD, 6t94:AAA, 6t94:BBB, 6t94:CCC, 6t94:DDD
18 6c80:B 486 47 0.1280 0.0329 0.3404 7.8 6c80:A
19 6iym:A 277 82 0.1600 0.0722 0.2439 8.6 6iym:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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