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BioLiP
>protein
MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV
VGLEINANHVRSAREGRVRGVCKPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4k49:C 136 136 1.0000 1.0000 1.0000 2.73e-99 4k49:B, 4k49:D, 4k49:A, 4k4a:A, 4k4a:B, 4k4a:D, 4k4a:C, 4k4b:A, 4k4b:B, 4k4b:C, 4k4b:D, 4k4b:E, 4k4b:F, 4k4b:G, 4k4b:H
2 4k4c:A 137 136 0.5956 0.5912 0.5956 1.62e-57 4k4c:B, 4k4c:D, 4k4c:C, 4k4d:A, 4k4d:B
3 4qd8:C 139 136 0.5221 0.5108 0.5221 8.59e-46 4qd8:E, 4qd8:F, 4qd8:D, 4qd9:C, 4qd9:D, 4qd9:F, 4qd9:E
4 4m20:A 121 113 0.3162 0.3554 0.3805 7.60e-22 4m20:B, 4m20:D, 4m20:C
5 5hmc:A 125 112 0.2721 0.2960 0.3304 1.06e-12
6 1q4s:A 142 116 0.2574 0.2465 0.3017 1.23e-10 1q4s:B, 1q4t:A, 1q4t:B, 1q4u:A, 1q4u:B, 3r32:A, 3r32:B, 3r34:A, 3r34:B, 3r35:A, 3r35:B, 3r37:A, 3r37:B, 3r3a:A, 3r3a:B, 3r3b:A, 3r3b:B, 3r3c:A, 3r3c:B, 3r3d:A, 3r3d:B, 3r3f:A, 3r3f:B, 3tea:A, 3tea:B
7 3nwz:B 151 96 0.1544 0.1391 0.2188 8.09e-04 3nwz:C, 3nwz:D
8 3f5o:A 138 57 0.1324 0.1304 0.3158 0.038 3f5o:B, 3f5o:C, 3f5o:D, 3f5o:E, 3f5o:F, 3f5o:G, 3f5o:H
9 4zrb:E 128 115 0.2132 0.2266 0.2522 0.46 4zrb:A, 4zrb:D, 4zrb:B, 4zrb:C, 4zrb:G, 4zrb:H, 4zrb:F
10 7yff:B 740 52 0.1250 0.0230 0.3269 0.99 7yff:D
11 2k0x:A 86 30 0.1029 0.1628 0.4667 1.3 2kg6:A, 2kg8:A, 2kg9:A, 2kga:A, 2kgc:A, 2kgd:A, 2kge:A, 2mvu:A, 2mvv:A
12 4z28:A 127 53 0.1176 0.1260 0.3019 2.1 4z28:B, 4z2o:A, 4z2p:A, 4z2p:B, 4z2v:A, 4z2v:B
13 7bgg:A 216 42 0.1103 0.0694 0.3571 3.1 7ndm:A, 7nmk:A, 7noy:A
14 3q8x:D 271 60 0.1250 0.0627 0.2833 6.6
15 8rpl:B 630 58 0.1471 0.0317 0.3448 7.7 8rpk:A, 8rpk:B, 8rpk:C, 8rpk:D, 8rpl:A, 8rpl:C, 8rpl:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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