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BioLiP
>protein
MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCV
VGTELNATHHRPVSEGKVRGVCQPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4k4c:A 137 137 1.0000 1.0000 1.0000 1.35e-100 4k4c:B, 4k4c:D, 4k4c:C, 4k4d:A, 4k4d:B
2 4k49:C 136 136 0.5912 0.5956 0.5956 1.64e-57 4k49:B, 4k49:D, 4k49:A, 4k4a:A, 4k4a:B, 4k4a:D, 4k4a:C, 4k4b:A, 4k4b:B, 4k4b:C, 4k4b:D, 4k4b:E, 4k4b:F, 4k4b:G, 4k4b:H
3 4qd8:C 139 136 0.4453 0.4388 0.4485 3.54e-36 4qd8:E, 4qd8:F, 4qd8:D, 4qd9:C, 4qd9:D, 4qd9:F, 4qd9:E
4 4m20:A 121 104 0.2336 0.2645 0.3077 1.61e-13 4m20:B, 4m20:D, 4m20:C
5 1q4s:A 142 120 0.2701 0.2606 0.3083 2.80e-12 1q4s:B, 1q4t:A, 1q4t:B, 1q4u:A, 1q4u:B, 3r32:A, 3r32:B, 3r34:A, 3r34:B, 3r35:A, 3r35:B, 3r37:A, 3r37:B, 3r3a:A, 3r3a:B, 3r3b:A, 3r3b:B, 3r3c:A, 3r3c:B, 3r3d:A, 3r3d:B, 3r3f:A, 3r3f:B, 3tea:A, 3tea:B
6 5hmc:A 125 107 0.2482 0.2720 0.3178 1.49e-10
7 3nwz:B 151 102 0.2336 0.2119 0.3137 5.33e-08 3nwz:C, 3nwz:D
8 3f5o:A 138 82 0.1606 0.1594 0.2683 0.010 3f5o:B, 3f5o:C, 3f5o:D, 3f5o:E, 3f5o:F, 3f5o:G, 3f5o:H
9 6hiv:AE 293 86 0.2117 0.0990 0.3372 0.33 6hix:AE
10 6yxy:AE 434 85 0.2117 0.0668 0.3412 0.34 7aih:A, 7am2:A, 7ane:A, 7aoi:AE, 6yxx:AE
11 8h2w:B 984 84 0.1898 0.0264 0.3095 2.7 8h2w:A, 5nz8:B
12 3euj:A 437 60 0.1168 0.0366 0.2667 3.1
13 7ecc:A 299 44 0.1168 0.0535 0.3636 3.1
14 7m4v:P 118 60 0.1241 0.1441 0.2833 4.5 7m4w:P, 7m4x:P, 7m4y:P, 7m4z:P, 7ryf:P, 7ryg:P, 7ryh:P, 7uvv:P, 7uvw:P, 7uvx:P, 7uvy:P, 7uvz:P, 7uw1:P, 6v39:P, 6v3a:P, 6v3b:P, 6v3d:P, 6yhs:M, 6ysi:M
15 7ajr:AAA 298 69 0.1387 0.0638 0.2754 5.1 8cc4:A, 8cc4:B, 8cr3:A, 8cr4:A, 8cr7:A, 8cr7:B, 3dbk:A, 1ezm:A, 6f8b:A, 6fzx:A, 4k89:A, 7nlk:A, 7nlk:B, 7nlm:A, 7oc7:A, 7qh1:A, 7qh1:B, 7qh1:C, 7qh1:D, 1u4g:A, 7z68:A
16 3nqy:B 307 74 0.1606 0.0717 0.2973 5.3 3nqx:A, 3nqz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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