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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MIVNVIQKDRLKEQKLQFIRNHQQAFDVEPIYPLPLFEDFVTSIEGDCSLEASCKIESDKLIASRFLLFFEDKTQEWQKY
LHQSLTFFGLVENRVGVKINYSLLQQFLGSSFDFSKVTVLSAGIDLRNNLAESSLKMHIRIKDYPEKLDKAFALSDGAAD
GNYLKDFVNLIGFDFYFNGKSEIEIYAEVQEDDFFKPEINNLVWQHFPKTALQPLKASSLFFTGLSKANNNPVLYYHLKN
RQDLTNYFKLNDTAQRVHSFYQHQDILPYMWVGTAQKELEKTRIENIRLYYYKSFKM

The query sequence (length=297) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6pgn:A 297 297 0.9966 0.9966 0.9966 0.0 5tu4:A, 5tu5:A, 5tu6:A
2 7vmw:A 296 284 0.4377 0.4392 0.4577 1.91e-78 8je4:A, 8je4:B, 7vmy:A, 7vmy:B
3 8ye0:C 290 287 0.3468 0.3552 0.3589 4.21e-57 8ye0:A, 8ye0:B, 8ye0:D
4 7ov8:A 303 83 0.0774 0.0759 0.2771 1.3 7ov2:A, 7ov3:A, 5uq6:A, 1ute:A
5 4ml9:A 276 53 0.0606 0.0652 0.3396 3.9 4ml9:B
6 5crg:A 354 74 0.0842 0.0706 0.3378 5.2 5crd:A, 5cre:A, 5crg:B, 5crg:C, 5crg:D, 5crh:A, 5crh:B, 5kn0:A, 5kn0:B, 5kn0:C, 5kn0:D, 5kn1:A, 5kn1:B, 5kn1:C, 5kn2:A, 5kn2:B, 5kn2:C, 5kn3:A, 3trp:A, 3trq:A, 3uom:A, 3uom:B, 3uom:C, 3uom:D, 3uom:E, 3uom:F, 3us3:A, 3v1w:A
7 8oo2:A 177 49 0.0539 0.0904 0.3265 6.0 8oo2:B
8 3lkf:A 292 106 0.0943 0.0959 0.2642 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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