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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MISNFRKFHGNKNQEKFNENLILNKENESILNYLDPICKTLEIIPEITYLGSSVEPINKVYKFNKEEKTSDIERSELQLI
KMSFLIEKDDKKEEINKFIYFPKLIDSQYFIINGNRYYPIYQLLDSGTYRTNKALTLKTLLMPIVLREKKETFDDINGET
HTMLNVDLDLFKSKVPFLIYFFSKFGFEGTLEYFGLQDLIHVLMKEDLDQLDEDEINDNVIFMITKNISLVVDKNFFSNK
NNQIIIATLLNCFNTRIKIDKIYEKDYWVKKLGGYFTTNNSNKQEKGEGIILSFERILDEWTKKILRTEEKNKEDIYSVV
RWMINNYLALVKQDNMNLANKRIRLYEYLLHPLLIKFSKGTYRVLNNRNSNKFEKIKTIFSNIQEGFLVKKIINNELLRY
DNSVNSISLFTLILRYTQSGPQSPFSSNSTNNKLRGLHPSYLGRLGLTSTSAGDPGASGSLTPFLELPENSYMHFTEEPE
INLN

The query sequence (length=484) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7s01:c 484 484 1.0000 1.0000 1.0000 0.0
2 8h3v:A 1077 182 0.0909 0.0409 0.2418 0.057 8h40:A
3 8gzh:C 1052 156 0.0744 0.0342 0.2308 0.14 8gzg:C
4 8wb4:S 203 84 0.0413 0.0985 0.2381 0.24 8wb4:s, 8xkl:s, 8xr6:n, 8xr6:N
5 8urw:C 1080 175 0.0888 0.0398 0.2457 1.1 8syi:C
6 8evk:A 115 55 0.0393 0.1652 0.3455 1.9
7 8rdj:C 1040 66 0.0455 0.0212 0.3333 3.3
8 8ras:C 726 66 0.0455 0.0303 0.3333 3.9
9 6jrs:A 3488 77 0.0413 0.0057 0.2597 5.5 6jrs:D, 6jrs:G, 6jrs:J
10 6jiy:A 3521 77 0.0413 0.0057 0.2597 5.5 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
11 7vml:A 4044 77 0.0413 0.0049 0.2597 5.5 7aih:UA, 7am2:UA, 7ane:UA, 5dat:l1, 5gak:r, 6hd7:r, 6j3z:19, 6j40:19, 6j40:39, 5mc6:AZ, 6n8k:s, 6n8l:s, 6n8m:S, 6n8n:S, 6n8o:S, 7nrc:Lt, 6o1o:F, 6o1o:G, 6o1o:H, 6qik:p, 6qtz:p, 6ri5:p, 7rr5:L1, 6rzz:p, 6s05:p, 5t62:S, 5t6r:S, 6tnu:BT, 7vml:B, 7vml:C, 7vml:D, 7vmm:A, 7vmm:B, 7vmm:C, 7vmm:D, 7vmn:A, 7vmn:B, 7vmn:C, 7vmn:D, 7vmo:A, 7vmo:B, 7vmo:C, 7vmo:D, 7vmp:A, 7vmp:B, 7vmp:C, 7vmp:D, 7vmq:A, 7vmq:B, 7vmq:C, 7vmq:D, 7vmr:A, 7vmr:B, 7vmr:C, 7vmr:D, 7vms:A, 7vms:B, 7vms:C, 7vms:D
12 5go9:A 3423 77 0.0413 0.0058 0.2597 5.5 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
13 6jgz:B 3485 77 0.0413 0.0057 0.2597 5.5 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
14 8uxh:A 4004 77 0.0413 0.0050 0.2597 5.5 8uxh:B, 8uxh:C, 8uxh:D, 8uxi:A, 8uxi:B, 8uxi:C, 8uxi:D
15 8uxl:A 4232 77 0.0413 0.0047 0.2597 5.5 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
16 8dtz:A 4061 77 0.0413 0.0049 0.2597 5.6 8dtz:B, 8dtz:C, 8dtz:D
17 8dty:A 4004 77 0.0413 0.0050 0.2597 6.2 8dty:B, 8dty:C, 8dty:D
18 8dy7:C 1118 90 0.0496 0.0215 0.2667 6.3 8dy9:C, 8hvr:C, 8jke:C, 8k60:C, 7vpd:C, 7vpz:C, 7x74:C, 7x75:C, 7x76:C
19 6wou:A 3921 77 0.0413 0.0051 0.2597 6.4 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
20 8dvv:A 3886 77 0.0413 0.0051 0.2597 6.6 8dvv:B, 8dvv:C, 8dvv:D
21 7ua3:A 4443 77 0.0413 0.0045 0.2597 6.6 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
22 6zqg:JD 829 40 0.0289 0.0169 0.3500 7.7
23 6h57:A 795 40 0.0289 0.0176 0.3500 8.8
24 7aju:JD 811 40 0.0289 0.0173 0.3500 9.0 6zqd:JD, 6zqe:JD, 6zqf:JD
25 7d63:RZ 839 40 0.0289 0.0167 0.3500 9.5 7d4i:RZ, 7d5t:RZ, 7mqj:A
26 4bjr:A 500 78 0.0331 0.0320 0.2051 9.9 4b0t:A, 4b0t:B, 4bjr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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