Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MISKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE
ETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQM
KLSASDVRFGPFLSKEVSPVFVQKWQKEAEKLEFALEERQVLVDKIQAIKEVLH

The query sequence (length=214) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ku1:A 214 214 1.0000 1.0000 1.0000 4.40e-153 3ku1:C, 3ku1:G, 3ku1:H
2 3lec:A 225 220 0.6355 0.6044 0.6182 6.36e-89
3 7o4n:A 226 193 0.4112 0.3894 0.4560 4.94e-48 7o4o:A
4 6qe6:A 226 204 0.2897 0.2743 0.3039 1.03e-25 6qe6:B
5 1b0p:A 1231 66 0.1028 0.0179 0.3333 0.55 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
6 6hiw:DC 1095 94 0.0981 0.0192 0.2234 1.6
7 3eu9:A 232 35 0.0561 0.0517 0.3429 1.7 5w7i:A, 5w7i:C, 5w7j:A, 5w7j:C
8 4b65:A 456 185 0.1869 0.0877 0.2162 1.8 4b63:A, 4b64:A, 4b66:A, 4b67:A, 4b68:A, 4b69:A, 5cku:A, 7jvk:A, 7jvk:B, 7jvk:C, 7jvk:D, 7jvl:A, 7jvl:B, 7jvl:C, 7jvl:D, 4nzh:A, 6x0h:A, 6x0h:B, 6x0h:C, 6x0h:D, 6x0i:A, 6x0i:B, 6x0i:C, 6x0i:D, 6x0j:A, 6x0j:B, 6x0j:C, 6x0j:D, 6x0k:A, 6x0k:B, 6x0k:C, 6x0k:D, 6x0k:E, 6x0k:F, 6x0k:G, 6x0k:H
9 8v9l:z 375 94 0.1402 0.0800 0.3191 3.4 8v9j:z
10 8asn:F 317 49 0.0748 0.0505 0.3265 3.5
11 6uro:B 378 69 0.1028 0.0582 0.3188 3.7 6dnh:B, 8e3i:B, 6fuw:B, 8r8r:B
12 8asn:G 346 41 0.0701 0.0434 0.3659 4.7 8asn:H, 8asn:I, 5m7g:F
13 3ui2:A 234 67 0.0841 0.0769 0.2687 4.8 3dep:A, 2hug:A
14 7m8q:A 515 32 0.0561 0.0233 0.3750 5.3 6d7k:A, 6d7k:E, 7m8q:E, 7m8r:A, 7m8r:E, 1mhy:D, 1mhz:D, 7s6q:A, 7s6q:E, 7s6r:A, 7s6r:E, 7s6s:A, 7s6s:E, 7s6t:A, 7s6t:E, 7s7h:A, 7s7h:E, 6vk4:A, 6vk4:E, 6vk5:A, 6vk5:E, 6vk6:A, 6vk7:A, 6vk8:A, 6vk8:E, 6yd0:D, 6ydi:D, 6ydu:D, 6yy3:D
15 5k1y:D 92 36 0.0467 0.1087 0.2778 5.5 5k1y:C, 5k1y:A, 5k1y:B, 5k1y:E, 5k1y:F, 5k5o:A, 5k5o:B, 5k5o:C, 5k5o:D, 5k5q:C, 5k5q:D, 5k5q:A, 5k5q:B, 5k5q:E, 5k5q:F, 5k5r:C, 5k5r:D, 5k5r:A, 5k5r:B, 5k5r:E, 5k5r:F, 5kk1:C, 5kk1:D, 5kk1:A, 5kk1:B, 5kk1:E, 5kk1:F
16 4c4a:A 641 56 0.0935 0.0312 0.3571 6.4 6ogn:A
17 7osj:H 151 77 0.0981 0.1391 0.2727 6.4 7osf:H, 7osg:H, 7osh:H, 7osi:H, 7znq:L
18 7lz8:F 256 53 0.0841 0.0703 0.3396 6.5
19 9eoc:B 485 52 0.0701 0.0309 0.2885 8.0
20 6f7c:F 281 40 0.0701 0.0534 0.3750 8.1 7zx2:F
21 5s54:F 322 40 0.0701 0.0466 0.3750 8.4 8a9t:F, 8a9z:F, 7cbz:F, 5sb9:F
22 8pk5:B 495 52 0.0701 0.0303 0.2885 9.2
23 4wbd:A 540 169 0.2056 0.0815 0.2604 9.4

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218