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BioLiP
>protein
MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERI
KALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGTLEQRLKRYH

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2p7p:A 131 131 0.9841 0.9466 0.9466 2.33e-88 2p7o:A, 2p7o:B, 2p7p:B, 2p7p:C, 2p7p:D, 2p7p:E, 2p7p:F, 2p7q:A, 2p7q:B, 2p7q:C, 2p7q:D, 2p7q:E, 2p7q:F
2 1r9c:A 125 130 0.5556 0.5600 0.5385 1.09e-48 1r9c:B
3 4jd1:B 148 129 0.3571 0.3041 0.3488 9.40e-21 5f6q:A, 5f6q:B, 4ir0:A, 4ir0:B, 4jd1:A
4 7n7g:A 138 129 0.3333 0.3043 0.3256 6.58e-18 7n7g:B
5 8dtd:A 138 129 0.3095 0.2826 0.3023 2.64e-17 8dtd:B, 8e7q:A, 8e7q:B, 8e7r:A, 8e7r:B, 8g7f:A, 8g7f:B, 8g7g:A, 8g7g:B, 8g7h:A, 8g7h:B, 8g7i:A, 8g7i:B, 4jh1:A, 4jh1:B, 4jh2:A, 4jh2:B, 4jh3:A, 4jh3:B, 4jh4:A, 4jh4:B, 4jh5:A, 4jh5:B, 4jh6:A, 4jh6:B, 4jh7:A, 4jh7:B, 4jh8:A, 4jh8:B, 4jh9:A, 4jh9:B
6 5vb0:C 143 127 0.3333 0.2937 0.3307 1.02e-16 5vb0:A, 5vb0:B, 5vb0:D, 5vb0:E, 5vb0:F, 5vb0:G, 5vb0:H, 5wep:A, 5wep:B
7 5wew:B 141 128 0.3413 0.3050 0.3359 2.53e-16 6c3u:A, 6c3u:B, 6c3u:C, 6c3u:D, 8r37:B, 8r37:A, 5v3d:A, 5v3d:B, 5v91:A, 5v91:B, 5wew:A, 5wew:C, 5wew:D, 5wew:F, 5wew:G, 5wew:H
8 4naz:A 130 128 0.3413 0.3308 0.3359 1.68e-13 4nay:A, 4nb0:A, 4nb0:B, 4nb1:B, 4nb1:A
9 1lqk:A 134 127 0.3333 0.3134 0.3307 3.22e-13 1lqk:B, 1lqo:A, 1lqo:B, 1lqp:A, 1lqp:B, 1nki:A, 1nki:B, 1nnr:A, 1nnr:B
10 5wew:E 119 122 0.3095 0.3277 0.3197 1.94e-11
11 6a4z:A 127 116 0.2381 0.2362 0.2586 7.07e-06 6a4z:B, 7w5e:A, 7w5e:B, 7w5e:C, 7w5e:D, 7wb2:A, 7wb2:B, 7wb2:C, 7wb2:D
12 1xqa:A 112 93 0.2063 0.2321 0.2796 2.44e-05 1xqa:B
13 8he6:B 120 59 0.1746 0.1833 0.3729 0.006
14 3kol:A 146 130 0.2460 0.2123 0.2385 0.092
15 5ify:A 293 58 0.1349 0.0580 0.2931 0.16 5ify:B, 5ify:C, 5ify:D, 5ify:E, 5ify:F
16 7ax0:A 317 105 0.2063 0.0820 0.2476 0.22 7ax2:A
17 7ax0:A 317 105 0.2063 0.0820 0.2476 0.22 7ax2:A
18 6qh4:C 138 29 0.0952 0.0870 0.4138 0.22 6qh4:A, 6qh4:B, 6qh4:D, 3rmu:A, 3rmu:B, 3rmu:C, 3rmu:D
19 6n0u:A 295 54 0.1349 0.0576 0.3148 0.32 6n0u:B, 6n0u:C, 6n0u:D
20 6a52:B 125 58 0.1349 0.1360 0.2931 0.33 6a52:A
21 4ho9:A 294 33 0.1032 0.0442 0.3939 0.48 4ho3:A, 4ho4:A, 4ho5:A, 4ho5:B, 4ho6:A, 4ho8:A, 4ho8:B, 4ho8:C, 4ho8:D, 4ho9:B, 4hoc:A, 4hoc:B
22 6a4x:A 127 120 0.2222 0.2205 0.2333 0.50
23 1mc3:A 291 44 0.1032 0.0447 0.2955 1.3 1mc3:B
24 3oaj:A 310 119 0.2302 0.0935 0.2437 1.4 3oaj:B
25 6bge:A 323 34 0.1270 0.0495 0.4706 1.8 6bge:B, 1g6o:A, 1g6o:B, 1nly:A, 1nly:B
26 3l7t:B 133 133 0.2460 0.2331 0.2331 2.3
27 8dyu:A 2562 49 0.1032 0.0051 0.2653 3.9 8dyv:A
28 8fcy:A 2864 48 0.1032 0.0045 0.2708 4.1 8fd6:A, 8fdt:A
29 8ptk:f 4502 48 0.1032 0.0029 0.2708 4.1 8ptk:e
30 7z8g:A 3047 48 0.1032 0.0043 0.2708 4.2 8fdu:A, 7z8l:f
31 8pqw:A 2892 48 0.1032 0.0045 0.2708 4.3 8pqy:A, 8pqz:A, 8pqz:J
32 5nug:A 2920 48 0.1032 0.0045 0.2708 4.3 5nug:B
33 7z8f:e 4579 48 0.1032 0.0028 0.2708 4.4 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
34 4mh1:B 514 20 0.0794 0.0195 0.5000 4.9
35 8a90:B 530 59 0.1270 0.0302 0.2712 5.3 8a90:A
36 2rio:A 396 73 0.1508 0.0480 0.2603 5.5 2rio:B
37 6t7j:B 632 31 0.0952 0.0190 0.3871 5.6 6t7j:A, 6t7j:D
38 8xd5:A 419 26 0.0873 0.0263 0.4231 6.2 8hho:A, 8hiq:A, 8hiz:A, 8hj9:A, 8xco:A, 8xcp:A, 8xcq:A, 8xcr:A, 8xcs:A, 8xct:A, 8xcu:A, 8xcv:A, 8xcw:A, 8xcx:A, 8xcy:A, 8xcz:A, 8xd0:A, 8xd1:A, 8xd2:A, 8xd3:A, 8xd4:A, 8xd6:A, 8znb:A, 8znc:A, 8znd:A, 8zne:A, 8zng:A
39 4rh7:A 3005 49 0.1111 0.0047 0.2857 6.5
40 6sc2:B 3930 49 0.1111 0.0036 0.2857 7.2 6rla:A, 6rla:B, 6sc2:A
41 5xon:A 1427 29 0.0794 0.0070 0.3448 8.6 6a5l:A, 6a5o:A, 6a5p:A, 6a5r:A, 6a5t:A, 6a5u:A, 8h0v:A, 8h0w:A, 8he5:A, 6inq:A, 6ir9:A, 6j4w:A, 6j4x:A, 6j4y:A, 6j4z:A, 6j50:A, 6j51:A, 8jh2:A, 8jh3:A, 8jh4:A, 7wbv:A, 7wbw:A, 7wbx:A, 5x4z:M, 5x50:A, 7xn7:A, 5xog:A, 7xse:A, 7xsx:A, 7xsz:A, 7xt7:A, 7xtd:A, 7xti:A, 8yfq:A
42 7moq:C 4159 65 0.1349 0.0041 0.2615 9.0 6zyy:C
43 5x51:M 1386 29 0.0794 0.0072 0.3448 9.0 5x4z:A, 5x51:A, 8yfr:A
44 6zyw:C 4433 65 0.1349 0.0038 0.2615 9.2
45 8bx8:A 4453 65 0.1349 0.0038 0.2615 9.4 7k58:A, 7k5b:A, 7kek:A
46 8bwy:C 4264 65 0.1349 0.0040 0.2615 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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