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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPL
RGCIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDGIIGAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dwk:B 156 156 0.9936 0.9936 0.9936 1.45e-110 1dwk:D, 1dwk:C, 1dwk:I, 1dwk:E, 1dwk:F, 1dwk:G, 1dwk:H, 1dwk:A, 1dwk:J, 2iu7:A, 2iu7:J, 2iu7:C, 2iu7:I, 2iu7:B, 2iu7:D, 2iu7:E, 2iu7:F, 2iu7:G, 2iu7:H, 2iuo:B, 2iuo:C, 2iuo:D, 2iuo:G, 2iuo:H, 2iuo:I, 2iv1:G, 2iv1:I, 2ivb:C, 2ivb:A, 2ivb:G, 2ivb:F, 2ivb:D, 2ivb:H, 2ivb:I, 2ivq:H, 2ivq:J, 8k6h:A, 8k6h:B, 8k6h:C, 8k6h:D, 8k6h:E, 8k6h:F, 8k6h:G, 8k6h:H, 8k6h:I, 8k6h:J, 8k6s:A, 8k6s:B, 8k6s:I, 8k6s:G, 8k6s:F, 8k6x:A, 8k6x:B, 8k6x:H, 8k6x:C, 8k6x:D, 8k6x:E, 8k6x:G, 8k6x:F, 8k6x:I, 8k6x:J
2 6tv0:A 155 154 0.6859 0.6903 0.6948 5.57e-75 6tv0:J, 6tv0:G, 6tv0:I, 6tv0:B, 6tv0:E, 6tv0:C, 6tv0:H, 6tv0:D, 6tv0:F, 4y42:B, 4y42:H, 4y42:I, 4y42:J
3 6xgt:D 160 148 0.3782 0.3688 0.3986 3.87e-24 6xgt:F, 6xgt:G, 6xgt:H, 6xgt:A, 6xgt:B
4 1jmt:A 98 59 0.1090 0.1735 0.2881 0.070
5 2b3b:A 392 40 0.0962 0.0383 0.3750 1.8 2b3b:B, 2b3b:C, 2b3b:D, 2b3b:E, 2b3b:F, 2b3f:A, 2b3f:B, 2b3f:C, 2b3f:D, 2b3f:E, 2b3f:F
6 4ex5:A 486 48 0.0897 0.0288 0.2917 2.1 4ex5:B
7 3m4p:A 435 52 0.0833 0.0299 0.2500 2.3 3m4p:B, 3m4p:C, 3m4p:D
8 4mmp:A 308 46 0.0897 0.0455 0.3043 2.8
9 7kmq:B 754 97 0.1987 0.0411 0.3196 3.5 7kmq:A
10 4jbg:A 333 103 0.1795 0.0841 0.2718 6.0 4jbg:B, 4jbg:C, 4jbg:D, 4jbh:A, 4jbh:B, 4jbh:C, 4jbh:D, 4jbi:A, 4jbi:B, 4jbi:C, 4jbi:D, 4jbi:E, 4jbi:F, 4jbi:G, 4jbi:H, 4jbi:I, 4jbi:J, 4jbi:K, 4jbi:L, 4jbi:M, 4jbi:N, 4jbi:O, 4jbi:P
11 5yy2:A 569 17 0.0577 0.0158 0.5294 7.0
12 7evo:D 200 48 0.0833 0.0650 0.2708 7.3 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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