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BioLiP
>protein
MIQQTGYSKKVMEHFMNPRNVGVIDDPDGYGKVGNPVCGDLMEIFIKVGDEKIEDIKFRTFGCGAAIATSSMITEMARGK
SLEEAMRITRNDVADALDGLPPQKMCCSNLAADALHAAINDYLSKKQ

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cnv:A 132 127 1.0000 0.9621 1.0000 1.23e-93 7c8m:A, 7c8m:C, 7c8n:A, 7c8o:D, 7c8o:B, 7cnv:B, 7cnv:C, 7cnv:D, 7cnv:E, 7cnv:F
2 4eb5:C 138 119 0.6772 0.6232 0.7227 1.32e-59 4eb5:D, 4eb7:C
3 2z7e:B 140 122 0.5197 0.4714 0.5410 1.28e-46
4 1r9p:A 134 124 0.5433 0.5149 0.5565 9.33e-41
5 5wlw:D 128 124 0.4803 0.4766 0.4919 2.90e-35
6 1wfz:A 130 115 0.4567 0.4462 0.5043 5.77e-32 6nzu:D, 6nzu:H, 8pk8:D, 8pk9:D, 8pka:D, 5wlw:H
7 2qq4:A 138 133 0.3150 0.2899 0.3008 2.32e-18 2qq4:B, 2qq4:C, 2qq4:D, 2qq4:E, 2qq4:F, 2qq4:G, 2qq4:H, 2qq4:I, 2qq4:J
8 2azh:A 147 133 0.3228 0.2789 0.3083 3.15e-16 6jzv:A, 6jzv:B, 6jzv:C, 6jzv:D, 6jzw:A, 6jzw:B, 6jzw:C, 6jzw:D, 1xjs:A, 5xt5:D, 5xt5:C, 5xt6:D, 5xt6:C
9 1su0:B 136 131 0.3465 0.3235 0.3359 1.81e-15
10 6a6f:A 136 85 0.1811 0.1691 0.2706 2.79e-06 6a6f:B, 6a6g:C, 6a6g:D
11 8odq:A 150 85 0.1496 0.1267 0.2235 1.20e-05 8odq:C
12 1h80:A 433 48 0.1102 0.0323 0.2917 0.57 1h80:B
13 7mq8:NY 274 36 0.1102 0.0511 0.3889 0.99 7mq9:NY
14 7vax:F 471 86 0.1811 0.0488 0.2674 1.3 3a5c:E, 8gxw:E, 8gxx:E, 6r0w:E, 6r0y:D, 6r10:F, 7val:E, 7van:E, 7vap:E, 7vaq:E, 7var:E, 7vas:E, 7vat:E, 7vav:E, 7vaw:E, 7vay:E, 7vb0:E, 3w3a:E, 3w3a:M
15 6slb:AAA 257 84 0.1969 0.0973 0.2976 1.7 6sla:AAA, 6sla:BBB, 6sla:CCC, 6sla:DDD, 6sla:EEE, 6sla:FFF
16 7jz6:B 662 24 0.0866 0.0166 0.4583 4.8 7jz6:A, 7jz6:C, 7jz6:D
17 8iao:Aa 412 50 0.1339 0.0413 0.3400 5.7 8iar:Aa, 8ibd:AA, 8ibd:Aa, 8ibg:AA, 8ibg:Aa
18 7o3e:L 445 50 0.1339 0.0382 0.3400 5.7
19 2ags:A 634 38 0.1024 0.0205 0.3421 5.8 2a75:A, 2fhr:A, 1mz6:A, 1n1t:A, 1n1v:A, 1n1y:A
20 1be3:A 446 50 0.1339 0.0381 0.3400 6.5 2a06:A, 1bgy:A, 1bgy:M, 4d6t:N, 4d6u:A, 4d6u:N, 7dgq:k, 7dgq:w, 7dgr:k, 7dgr:w, 7dgs:k, 7dgs:w, 7dkf:A1, 7dkf:M1, 6fo0:N, 6fo0:A, 6fo2:N, 6fo2:A, 5luf:c, 5luf:l, 5nmi:N, 5nmi:A, 1pp9:A, 1ppj:A, 6qbx:a3, 6qc3:a1, 7tz6:A, 7tz6:N, 2ybb:a, 2ybb:A
21 7pkt:K 195 38 0.1024 0.0667 0.3421 6.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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