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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYMHLKVFKSLPGQNEDL
VLTGYQVDKNKDDELTGF

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1nb3:I 98 98 1.0000 1.0000 1.0000 2.32e-68 1nb3:J, 1nb3:K, 1nb3:L, 1nb5:I, 1nb5:J, 1nb5:K, 1nb5:L
2 3a65:A 384 95 0.2857 0.0729 0.2947 0.048 3a66:A, 2dcf:A, 3vwp:A, 3vwq:A, 3vwr:A, 2zm7:A, 2zm8:A, 2zm9:A, 2zma:A
3 3ww1:A 242 28 0.1122 0.0455 0.3929 1.1 3ww1:B, 3ww2:A, 3ww2:B, 3ww3:A, 3ww3:B, 3ww4:A, 3ww4:B
4 3gyq:A 261 55 0.1531 0.0575 0.2727 2.5 3gyq:B
5 6tfo:C 424 67 0.2041 0.0472 0.2985 3.0 6tfd:A, 6tfd:C, 6tfd:B, 6tfo:A, 6tfo:B
6 5osa:A 313 35 0.1224 0.0383 0.3429 3.1 5osa:C, 5osa:E, 5osb:A, 5osb:E, 5osb:B, 5osb:C, 5osb:D, 5osc:A, 5osc:B, 5osc:C, 5osc:D, 5osc:E
7 4ire:B 313 35 0.1224 0.0383 0.3429 3.1 6emx:A, 6emx:B, 6emx:C, 6emx:D, 6emx:E, 4f8h:A, 4f8h:B, 4f8h:E, 4f8h:C, 4f8h:D, 4hfc:A, 4hfc:B, 4hfc:C, 4hfc:D, 4hfd:A, 4hfd:B, 4hfd:C, 4hfd:D, 4hfd:E, 4hfe:D, 4hfh:A, 4hfh:B, 4hfh:C, 4hfh:D, 4hfh:E, 4hfi:A, 4hfi:E, 6hj3:A, 6hj3:E, 6hj3:B, 6hj3:C, 6hj3:D, 6hja:A, 6hja:B, 6hja:C, 6hja:D, 6hja:E, 6hji:A, 6hji:C, 6hji:D, 6hji:E, 4il4:A, 4il4:D, 4il4:E, 4il9:A, 4il9:B, 4il9:C, 4il9:E, 4ilb:A, 4ilb:B, 4ilb:C, 4ilb:E, 4ilc:B, 4ilc:C, 4ilc:E, 4ire:A, 4ire:C, 4ire:D, 4ire:E, 5iux:A, 5iux:E, 5iux:C, 5iux:D, 5l47:C, 5l4h:C, 5l4h:D, 5l4h:E, 5mur:B, 5mur:E, 5mvm:A, 5mvm:E, 5mvm:B, 5mvm:C, 5mvm:D, 5mvn:B, 5mvn:C, 5mvn:D, 5mvn:E, 5mzq:A, 5mzq:B, 5mzq:C, 5mzq:D, 5mzq:E, 5mzr:A, 5mzr:C, 5mzr:D, 5mzr:E, 5mzt:A, 5mzt:E, 5mzt:B, 5mzt:C, 5mzt:D, 3p4w:A, 3p4w:B, 3p4w:C, 3p4w:D, 3p4w:E, 3p50:A, 3p50:B, 3p50:C, 3p50:D, 3p50:E, 4qh1:A, 4qh1:E, 4qh1:B, 4qh1:C, 4qh1:D
8 3kl0:A 397 31 0.1224 0.0302 0.3871 4.8 3kl3:A, 3kl3:B, 3kl5:A, 3kl5:B, 3kl5:C
9 4ax8:A 450 65 0.1735 0.0378 0.2615 4.9 4azs:A, 4azt:A, 4azv:A
10 2dv6:A 422 67 0.2041 0.0474 0.2985 5.7 2dv6:B, 2dv6:C, 2dv6:D, 2dv6:E, 2dv6:F
11 3noj:A 235 39 0.1327 0.0553 0.3333 7.3
12 4qpw:A 142 45 0.1633 0.1127 0.3556 7.5
13 1ho5:A 525 54 0.2143 0.0400 0.3889 7.6 1ho5:B, 1hp1:A, 1hpu:A, 1hpu:B, 1hpu:C, 1hpu:D, 1oi8:A, 1oi8:B, 1ush:A, 2ush:A, 2ush:B, 4wwl:A
14 6jyt:A 597 31 0.1327 0.0218 0.4194 8.6 7cxm:E, 7cxm:F, 7cxn:E, 7cxn:F, 7cyq:F, 7cyq:E, 7egq:E, 7egq:R, 7egq:F, 7egq:S, 7eiz:E, 7eiz:F, 8gw1:E, 8gw1:F, 8gwb:F, 8gwb:E, 8gwe:F, 8gwe:E, 8gwf:F, 8gwf:E, 8gwg:F, 8gwg:E, 8gwi:F, 8gwi:E, 8gwk:E, 8gwk:F, 8gwm:E, 8gwm:F, 8gwn:F, 8gwn:E, 8gwo:F, 8gwo:E, 6jyt:B, 7krn:E, 7kro:E, 7kro:F, 7nio:A, 7nio:E, 7nn0:A, 7nn0:B, 7nn0:C, 7nn0:D, 7nng:B, 7rdx:E, 7rdx:F, 7rdy:E, 7rdy:F, 7rdz:E, 7rdz:F, 7re0:E, 7re0:F, 7re1:E, 7re1:F, 7re2:E, 7re3:E, 7re3:F, 7re3:K, 7re3:L, 5rl6:B, 5rl7:B, 5rl8:B, 5rl9:B, 5rlb:B, 5rlc:B, 5rld:B, 5rle:B, 5rlf:B, 5rlg:B, 5rlh:B, 5rli:B, 5rlj:B, 5rlk:B, 5rll:B, 5rlm:B, 5rln:B, 5rlo:B, 5rlp:B, 5rlq:B, 5rlr:B, 5rls:B, 5rlt:B, 5rlu:B, 5rlv:B, 5rlw:B, 5rly:B, 5rlz:B, 5rm0:B, 5rm1:B, 5rm2:B, 5rm3:B, 5rm4:B, 5rm5:B, 5rm6:B, 5rm7:B, 5rm8:B, 5rm9:B, 5rma:B, 5rmb:B, 5rmc:B, 5rmd:B, 5rme:B, 5rmf:B, 5rmg:B, 5rmh:B, 5rmi:B, 5rmj:B, 5rmk:B, 5rml:B, 5rmm:B, 5rob:B, 6xez:E, 6xez:F, 6zsl:B
15 4ax3:D 457 61 0.1837 0.0394 0.2951 9.0 4ax3:A, 4ax3:B, 4ax3:C, 6f1q:A, 6fja:A, 5obo:A, 5ocb:A, 5ocf:A, 8qgf:A, 6qpt:A, 6qpt:B, 6qpt:C, 6qpt:D, 6qpt:E, 6qpt:F, 6qpu:A, 6qpu:B, 6qpu:C, 6qpu:D, 6qpu:E, 6qpu:F, 6qpv:A, 6qpv:I, 6qpx:A, 6qpx:I, 6qpz:A, 6qpz:I, 6qq0:A, 6qq1:A, 6qq2:A, 7qq2:A, 7r2u:A, 2yqb:A, 3zbm:A, 3ziy:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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