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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGL
HRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2b76:D 119 119 1.0000 1.0000 1.0000 2.90e-82 2b76:P, 1kf6:D, 1kf6:P, 1kfy:D, 1kfy:P, 4kx6:D, 4kx6:P, 1l0v:D, 1l0v:P
2 5hy5:A 511 21 0.0840 0.0196 0.4762 1.9 5hy5:B
3 5w7m:A 273 39 0.1008 0.0440 0.3077 7.4
4 6suk:A 698 31 0.0840 0.0143 0.3226 7.6 4cth:A, 1dmt:A, 6gid:A, 5jmy:A, 5jmy:B, 2qpj:A, 1r1h:A, 1r1i:A, 1r1j:A, 6sh1:AAA, 6sh1:CCC, 6sh2:AAA, 6svy:A, 6thp:A, 6thp:B, 5v48:A, 5v48:B, 4xbh:A, 4xbh:B, 6xvp:A, 1y8j:A, 2yb9:A, 4zr5:A, 4zr5:B
5 7p6u:A 772 37 0.1176 0.0181 0.3784 9.2 7p6u:B, 7p6u:C, 7p6u:D, 7p6u:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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