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BioLiP
>protein
MILKRAYDVTPQKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIF
VEPNEIHGFRNDTDSEVEFLCLIPKEGGE

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hjx:A 118 114 0.9817 0.9068 0.9386 1.84e-72 8hjx:B, 8hjy:A, 8hjy:B, 8hjz:A, 8hjz:B, 6l2d:A, 6l2d:B, 6l2e:A, 6l2e:B, 6l2f:A, 6l2f:B, 1vj2:A, 1vj2:B, 5wse:A, 5wse:B, 5wse:C, 5wse:D, 5wsf:A, 5wsf:B, 5wsf:C, 5wsf:D, 8zyg:A, 8zyg:B, 8zyh:A, 8zyh:B
2 3ht2:A 143 115 0.3945 0.3007 0.3739 3.76e-11 3ht2:C
3 5tg0:A 137 108 0.2477 0.1971 0.2500 1.15e-05 6a53:A, 6a53:B, 6a54:A, 6a54:B, 6a55:A, 6a55:B, 8hlf:A, 8hlf:B, 5tfz:A, 5tfz:B
4 3ibm:B 146 91 0.2294 0.1712 0.2747 1.43e-05 3ibm:A
5 1o4t:A 115 109 0.2477 0.2348 0.2477 4.85e-05 1o4t:B
6 3jzv:A 148 103 0.2569 0.1892 0.2718 8.63e-05
7 3kgz:A 145 79 0.2110 0.1586 0.2911 2.45e-04 3kgz:B
8 3cew:A 118 62 0.1560 0.1441 0.2742 0.17 3cew:B, 3cew:C, 3cew:D
9 1lr5:D 160 98 0.2844 0.1938 0.3163 0.26 1lr5:C, 1lr5:B, 1lr5:A, 1lrh:D, 1lrh:C, 1lrh:B, 1lrh:A
10 2h0v:A 335 65 0.1651 0.0537 0.2769 0.27 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
11 5bpx:A 153 47 0.1376 0.0980 0.3191 0.55 4p9g:A
12 5vg3:A 382 56 0.1743 0.0497 0.3393 0.66 5hi0:A, 1j58:A, 1l3j:A, 4met:A, 4met:B, 4met:C, 4met:D, 3s0m:A, 6tzp:A, 6ufi:A, 1uw8:A, 2uy8:A, 2uy9:A, 2uya:A, 2uyb:A, 2v09:A, 5vg3:B, 5vg3:C
13 7cpx:A 2262 35 0.1101 0.0053 0.3429 1.1 7cpx:B, 7cpy:A, 7cpy:B
14 4bif:A 131 52 0.1468 0.1221 0.3077 1.2 4bif:B, 4bif:C, 4bif:D, 4bif:E, 4bif:F, 4bif:G, 4bif:H, 8oz8:A, 8oz8:B, 8oz8:C, 8oz8:D, 4uxa:A, 4uxa:B, 4uxa:C, 4uxa:D, 4uxa:E, 4uxa:F, 4uxa:G, 4uxa:H, 4uxa:I, 4uxa:J, 4uxa:K, 4uxa:L, 4uxa:M, 4uxa:N, 4uxa:O, 4uxa:P, 4uxa:Q, 4uxa:R, 4uxa:S, 4uxa:T
15 7chi:A 220 93 0.1927 0.0955 0.2258 1.4
16 3h9a:A 225 62 0.2110 0.1022 0.3710 2.3 3h7j:A, 3h7j:B, 3h7y:A, 3h7y:B, 3h9a:B
17 8v05:A 426 35 0.1193 0.0305 0.3714 7.5 8q1k:A, 8q1k:B, 8q1x:A, 8q1x:B, 8v06:B, 8v07:C, 8v07:B
18 3bal:A 149 56 0.1468 0.1074 0.2857 7.6 3bal:B, 3bal:C, 3bal:D
19 5zl1:A 306 58 0.1468 0.0523 0.2759 8.3 5zl1:B, 5zl1:C, 5zl1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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