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BioLiP
>protein
MILGAVFYIVFIALFFGIAVGIIFAIKSIKLI

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2e74:E 32 32 1.0000 1.0000 1.0000 2.28e-13 2e75:E, 4h0l:E, 4h13:E
2 4h44:E 31 27 0.4375 0.4516 0.5185 0.004 4ogq:E, 2zt9:E
3 7r0w:M 32 32 0.3438 0.3438 0.3438 1.1 7r0w:E, 7zxy:E, 7zxy:M
4 7rjt:A 902 28 0.3125 0.0111 0.3571 3.2 7rjt:B, 7rjt:C, 7rjt:D, 7rk6:A, 7rk6:B, 7rk6:C, 7rk6:D, 5tj6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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