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BioLiP
>protein
MIKSLFAVIIGGSVGCTLRWLLSTKFNSLFPNLPPGTLVVNLLAGLIIGTALAYFLRQPHLDPFWKLMITTGLCGGLSTM
STFSVEVFALLQAGNYIWALTSVLVHVIGSLIMTALGFFIITILF

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5a43:B 126 125 0.9840 0.9762 0.9840 1.72e-83 5a43:A, 6b24:A, 6b24:B, 6b2a:A, 6b2a:B, 6b2b:A, 6b2b:B, 6b2d:A, 6b2d:B, 6bx4:A, 6bx4:B, 6bx5:A, 6bx5:B, 5kbn:A, 5kbn:B, 7kk8:A, 7kk8:B, 7kk9:A, 7kk9:B, 7kka:A, 7kka:B, 7kkb:A, 7kkb:B, 7kkr:A, 7kkr:B, 5kom:A, 5kom:B
2 6bqo:B 128 122 0.3600 0.3516 0.3689 2.74e-14 6bqo:A, 5nkq:A, 5nkq:B, 5nkq:C
3 3sqd:A 211 44 0.1120 0.0664 0.3182 2.1 3sqd:B
4 8k9e:C 449 36 0.1200 0.0334 0.4167 9.4 8k9f:C, 8x2j:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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