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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFCRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLL
SAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDQ
QASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLG
NSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYM

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6mo5:A 303 295 0.9930 0.9406 0.9661 0.0 6c9c:A, 6cax:A, 7ci4:A, 7ci4:B, 7ci5:A, 7ci5:B, 7ci5:C, 7ci5:D, 7ci6:A, 7ci6:B, 7ci7:A, 7ci8:A, 7ci8:B, 7ci9:A, 7cia:A, 7cib:A, 7cic:A, 7cic:B, 7cid:A, 7cie:A, 7cie:B, 7del:A, 7dem:A, 7den:A, 5drq:A, 5drr:A, 6dui:A, 8e4a:A, 6e54:A, 4fw3:A, 4fw3:B, 4fw3:C, 4fw3:D, 4fw4:A, 4fw4:B, 4fw4:C, 4fw4:D, 4fw5:A, 4fw5:B, 4fw5:C, 4fw5:D, 4fw6:A, 4fw6:B, 4fw6:C, 4fw6:D, 4fw7:A, 4fw7:B, 4fw7:C, 4fw7:D, 6i46:AAA, 6i47:AAA, 6i48:AAA, 6i49:AAA, 6i49:BBB, 6i4a:AAA, 4j3d:A, 4j3d:B, 7k99:A, 7k99:C, 7k9a:A, 7k9a:C, 4lcf:A, 4lcg:A, 4lch:A, 6mae:A, 6mo4:A, 6mod:A, 6moo:A, 5n8c:A, 5n8c:B, 4okg:A, 4okg:B, 3p3e:A, 7phn:A, 7pj2:A, 7pjg:A, 7pk8:A, 7pkk:A, 7pkm:A, 7pzs:A, 7pzu:A, 7pzv:A, 7pzw:A, 7pzx:A, 7q01:A, 3u1y:A, 3u1y:B, 5u39:A, 5u3b:A, 5u3b:B, 3uhm:A, 5upg:A, 2ves:A, 2ves:B, 2ves:C, 5vwm:A
2 4mqy:A 302 297 0.5923 0.5629 0.5724 1.83e-126 4is9:A, 4is9:B, 4isa:A, 4mdt:A, 4mdt:B, 4mdt:C, 4mdt:D, 3nzk:A, 3nzk:B, 3p3g:A, 7phj:A, 3ps1:A, 3ps2:A, 3ps3:A, 8v24:B, 8v24:D
3 3p3c:A 272 265 0.3345 0.3529 0.3623 1.45e-47 5dro:A, 5dro:B, 5drp:A, 5drp:B, 2go3:A, 2go3:B, 2go4:A, 2go4:B, 2ier:A, 2ier:B, 2ies:A, 2ies:B, 6ih0:A, 2j65:A, 2j65:B, 2jt2:A, 2o3z:A, 2o3z:B, 4oze:A, 4oze:B, 1p42:A, 1p42:B, 3p76:A, 4u3b:A, 4u3d:A, 5u86:A, 1xxe:A, 1yh8:A, 1yh8:B, 1yhc:A, 1yhc:B
4 6jrs:A 3488 41 0.0557 0.0046 0.3902 0.52 6jrs:D, 6jrs:G, 6jrs:J
5 8j43:A 285 26 0.0453 0.0456 0.5000 0.78 8j43:B
6 5k6w:A 475 224 0.1777 0.1074 0.2277 0.92 5k6v:A, 5k6w:B
7 7olc:LW 133 33 0.0488 0.1053 0.4242 1.8 7old:LW, 8oo0:LW, 7r81:Y1, 7z3n:LW, 7z3o:LW
8 6x32:B 3798 18 0.0383 0.0029 0.6111 6.0 6x32:E, 6x32:H, 6x32:K
9 8dty:A 4004 34 0.0488 0.0035 0.4118 6.0 8dty:B, 8dty:C, 8dty:D
10 6w1n:B 3719 18 0.0383 0.0030 0.6111 6.1 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
11 6x35:B 3801 18 0.0383 0.0029 0.6111 6.1 6x35:E, 6x35:H, 6x35:K
12 6x33:B 3816 18 0.0383 0.0029 0.6111 6.1 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K
13 5o7h:B 129 81 0.0557 0.1240 0.1975 6.1
14 8dvv:A 3886 34 0.0488 0.0036 0.4118 6.2 8dvv:B, 8dvv:C, 8dvv:D
15 5gky:A 3660 31 0.0488 0.0038 0.4516 6.3 5gky:C, 5gky:E, 5gky:G, 5gkz:A, 5gkz:C, 5gkz:E, 5gkz:G, 5gl0:A, 5gl0:C, 5gl0:E, 5gl0:G, 5gl1:A, 5gl1:C, 5gl1:E, 5gl1:G
16 7m6a:A 4306 30 0.0488 0.0033 0.4667 6.5 7m6a:G, 7m6a:B, 7m6a:I, 7m6l:A, 7m6l:G, 7m6l:B, 7m6l:I
17 8duj:D 3865 30 0.0488 0.0036 0.4667 6.6
18 8duj:G 3933 30 0.0488 0.0036 0.4667 6.6
19 8ok9:C 236 63 0.0627 0.0763 0.2857 6.7 8pvv:C, 8qg0:B
20 8duj:A 3823 30 0.0488 0.0037 0.4667 6.7
21 8vk4:D 4379 31 0.0488 0.0032 0.4516 6.8 8vjj:A, 8vjj:D, 8vjj:B, 8vjj:C, 8vjk:A, 8vjk:B, 8vjk:C, 8vjk:D, 8vk3:A, 8vk3:D, 8vk3:B, 8vk3:C, 8vk4:A, 8vk4:B, 8vk4:C
22 7tzc:A 4404 31 0.0488 0.0032 0.4516 6.8 3rqr:A, 8sen:A, 8sen:B, 8sen:C, 8sen:D, 8seo:A, 8seo:B, 8seo:C, 8seo:D, 8sep:A, 8sep:B, 8sep:C, 8sep:D, 8seq:A, 8seq:B, 8seq:C, 8seq:D, 8ser:A, 8ser:B, 8ser:C, 8ser:D, 8ses:A, 8ses:B, 8ses:C, 8ses:D, 8set:A, 8set:B, 8set:C, 8set:D, 7tzc:B, 7tzc:G, 7tzc:I
23 3j8h:A 3660 31 0.0488 0.0038 0.4516 6.9 3j8h:C, 3j8h:E, 3j8h:G
24 8duj:J 3892 30 0.0488 0.0036 0.4667 6.9
25 7cf9:A 3949 30 0.0488 0.0035 0.4667 6.9 7cf9:C, 7cf9:E, 7cf9:G, 8dtb:G, 8dtb:D, 6m2w:A, 6m2w:D, 6m2w:G, 6m2w:J
26 8dve:G 3944 30 0.0488 0.0035 0.4667 6.9 8dtb:A, 8dve:D, 8dve:A, 8dve:J
27 7t65:A 4252 30 0.0488 0.0033 0.4667 7.1 7t64:A, 7t64:B, 7t64:C, 7t64:D, 7t65:B, 7t65:C, 7t65:D
28 6wot:A 4197 30 0.0488 0.0033 0.4667 7.2 6wot:B, 6wot:C, 6wot:D
29 6foo:A 4168 30 0.0488 0.0034 0.4667 7.6 5dat:m2, 5dc3:m2, 5dgv:m2, 5fci:m2, 5fcj:m2, 6foo:B, 6foo:C, 6foo:D, 5i4l:m2, 5it7:KK, 6j3z:20, 6j3z:21, 5j4z:B, 6j40:20, 6j40:40, 6j40:21, 6j40:41, 8j5k:4, 8j5k:9, 5j7y:B, 5j8k:B, 7lh5:BK, 7lh5:DK, 5luf:B, 5lyb:m2, 5mrc:dd, 5mre:dd, 5mrf:dd, 5obm:m2, 5on6:m2, 5ot7:m, 7pkq:V, 7pkt:Y, 6q95:I, 5tga:m2, 5tzs:Z, 5tzs:m, 4u3m:m2, 4u3n:m2, 4u3u:m2, 4u4n:m2, 4u4o:m2, 4u4q:m2, 4u4r:m2, 4u4u:m2, 4u4y:m2, 4u4z:m2, 4u50:m2, 4u51:m2, 4u52:m2, 4u53:m2, 4u55:m2, 4u56:m2, 4u6f:m2, 4uq8:B, 6uz7:AK, 4v3p:SG, 4v5g:BK, 4v5g:DK, 4v5l:BK, 4v5p:BK, 4v5p:DK, 4v5q:BK, 4v5q:DK, 4v5r:BK, 4v5r:DK, 4v5s:BK, 4v5s:DK, 4v6i:AG, 4v88:DK, 4v8o:BK, 4v8q:AK, 4v8t:K, 4v8y:BK, 4v8z:BK, 4v90:BK, 8w4p:4, 6woo:K, 7y1a:A, 7y5e:A8, 7y5e:AC, 7y7a:AN, 7y7a:AY, 5z3g:d
30 7umz:A 3927 30 0.0488 0.0036 0.4667 7.7 6g4s:s, 6g4w:s, 5j4z:G, 5j7y:G, 5j8k:G, 5tzs:Q, 7umz:D, 7umz:B, 7umz:C, 5wyj:UC, 5wyj:AG, 5wyk:AG, 5wyk:UC, 4wz7:A, 6xyw:AP
31 7tdg:A 4134 30 0.0488 0.0034 0.4667 7.7 7tdg:C, 7tdg:D, 7tdg:B, 7tdi:B, 7tdi:C, 7tdi:D, 7tdi:A, 7tdj:A, 7tdj:B, 7tdj:C, 7tdj:D, 7tdk:A, 7tdk:B, 7tdk:C, 7tdk:D
32 7k0s:A 4110 30 0.0488 0.0034 0.4667 7.8 7k0s:B, 7k0s:D, 7k0s:C, 7k0t:A, 7k0t:B, 7k0t:D, 7k0t:C
33 5tb3:B 4196 30 0.0488 0.0033 0.4667 7.8 7aih:UB, 7am2:U5, 7am2:U2, 7ane:UB, 7aoi:UK, 6bbm:W, 6c5l:BJ, 6c5l:DJ, 9f1c:BK, 7f4v:aJ, 7f4v:bJ, 7f4v:cJ, 6fg3:A, 6fg3:B, 6fg3:C, 6fg3:D, 1fka:Q, 1fka:T, 5gan:x, 6h8k:Y, 6h8k:j, 6hiv:AB, 6hix:AB, 5j4z:H, 5j4z:E, 5j4z:F, 5j4z:I, 5j7y:H, 5j7y:E, 5j7y:F, 5j7y:I, 5j8k:H, 5j8k:E, 5j8k:F, 5j8k:I, 6jlu:N, 6jlu:n, 7jmf:B, 7jmf:E, 7jmf:G, 7jmf:I, 7jmg:B, 7jmg:E, 7jmg:I, 7jmg:G, 7jmh:B, 7jmh:E, 7jmh:G, 7jmh:I, 7jmi:B, 7jmi:E, 7jmi:G, 7jmi:I, 7jmj:B, 7jmj:E, 7jmj:G, 7jmj:I, 5jpq:n, 5jpq:C, 7l8w:H, 5lc5:P, 5ldw:P, 5ldx:P, 7lh5:BJ, 7lh5:DJ, 5lj3:x, 5lj5:x, 5luf:E, 5luf:F, 5luf:G, 5luf:I, 5nvs:I, 5nvs:K, 5nvs:J, 5nvs:L, 5nvu:K, 5nvu:M, 5nvu:L, 5nvu:N, 2o01:K, 6o1o:B, 6o1o:C, 6o1o:D, 6o1o:E, 6o1o:I, 6o1o:J, 6o1o:K, 5o31:P, 5ot7:l, 7pkq:D, 7pkt:X, 7pkt:C, 7pub:U7, 7pub:UE, 6pv6:B, 6pv6:E, 6pv6:I, 6pv6:G, 1pyh:C, 1pyh:E, 1pyh:K, 1pyh:S, 1pyh:Y, 6q95:H, 7qwq:s, 5t15:B, 5t15:E, 5t15:I, 5t15:G, 5t9m:B, 5t9m:E, 5t9m:I, 5t9m:G, 5t9n:B, 5t9n:E, 5t9n:I, 5t9n:G, 5t9r:B, 5t9r:E, 5t9r:I, 5t9r:G, 5t9s:B, 5t9s:E, 5t9s:I, 5t9s:G, 5t9v:B, 5t9v:G, 5t9v:I, 5t9v:E, 5ta3:B, 5ta3:G, 5ta3:I, 5ta3:E, 5tal:B, 5tal:G, 5tal:I, 5tal:E, 5tam:B, 5tam:E, 5tam:I, 5tam:G, 5tan:B, 5tan:E, 5tan:I, 5tan:G, 5tap:B, 5tap:E, 5tap:I, 5tap:G, 5taq:B, 5taq:E, 5taq:I, 5taq:G, 5tas:B, 5tas:I, 5tas:E, 5tas:G, 5tat:B, 5tat:I, 5tat:E, 5tat:G, 5tau:B, 5tau:I, 5tau:E, 5tau:G, 5tav:B, 5tav:E, 5tav:I, 5tav:G, 5taw:B, 5taw:G, 5taw:I, 5taw:E, 5tax:B, 5tax:I, 5tax:G, 5tax:E, 5tay:B, 5tay:G, 5tay:I, 5tay:E, 5taz:B, 5taz:I, 5taz:G, 5taz:E, 5tb0:B, 5tb0:G, 5tb0:E, 5tb0:I, 5tb1:B, 5tb1:I, 5tb1:E, 5tb1:G, 5tb2:B, 5tb2:I, 5tb2:E, 5tb2:G, 5tb3:E, 5tb3:I, 5tb3:G, 5tb4:B, 5tb4:E, 5tb4:I, 5tb4:G, 7tdh:A, 7tdh:B, 7tdh:C, 7tdh:D, 8tug:M, 8tvp:M, 8tvq:M, 8tvs:M, 8tye:L, 5tzs:y, 5tzs:n, 5tzs:o, 4uq8:E, 4uq8:F, 4uq8:G, 4uq8:I, 4v3p:SW, 4v3p:LL, 4v5e:BJ, 4v5e:DJ, 4v5f:BJ, 4v5f:BL, 4v5f:Bl, 4v5f:DJ, 4v5f:DL, 4v5f:Dl, 4v5g:BJ, 4v5g:DJ, 4v5j:BJ, 4v5j:DJ, 4v5k:BJ, 4v5k:DJ, 4v5l:BJ, 4v5p:BJ, 4v5p:DJ, 4v5q:BJ, 4v5q:DJ, 4v5r:BJ, 4v5r:DJ, 4v5s:BJ, 4v5s:DJ, 4v6i:AW, 4v6i:Ab, 4v6i:BL, 4v7r:Ab, 4v7r:Ac, 4v7r:Ad, 4v7r:Ah, 4v7r:Bh, 4v7r:Cb, 4v7r:Cc, 4v7r:Cd, 4v7r:Ch, 4v7r:Dh, 4v8n:BJ, 4v8n:DJ, 4v8o:BJ, 4v8q:AJ, 4v8u:BJ, 4v8u:DJ, 4v8x:BJ, 4v8x:DJ, 4v90:BJ, 4v9h:BJ, 4v9h:BL, 4v9i:BJ, 4v9i:DJ, 4v9j:BJ, 4v9j:DJ, 4v9k:BJ, 4v9k:DJ, 4v9l:BJ, 4v9l:DJ, 4v9m:BJ, 4v9m:DJ, 7vd5:5, 6w1s:G, 4w29:BJ, 4w29:DJ, 8wb4:g, 8wb4:G, 5wlc:SX, 6wmt:K, 4wt8:CJ, 4wt8:DJ, 5wyj:AA, 5wyj:UA, 5wyj:UB, 5wyk:AA, 5wyk:UA, 5wyk:UB, 4wz7:Z, 4wz7:AN, 8xkl:G, 6xyw:BI, 6xyw:BJ, 6xyw:BK, 7y3f:K, 6z1p:AD, 6z1p:BC, 5zep:0, 6zm5:v
34 7m7a:A 538 70 0.0627 0.0335 0.2571 7.9 7m7a:B, 7m7a:C, 7m7a:D
35 6k7s:B 286 124 0.1010 0.1014 0.2339 7.9 6k7r:A, 6k7r:B, 6k7s:A
36 6iia:B 1030 40 0.0627 0.0175 0.4500 8.4 6iia:E, 3w9j:B, 3w9j:E
37 4zjl:A 1044 40 0.0627 0.0172 0.4500 8.6 3aob:C, 3aoc:C, 3aod:A, 3aod:C, 9bfh:A, 9bfm:A, 9bfn:A, 9bft:A, 2dr6:A, 2drd:A, 4dx5:B, 4dx7:A, 4dx7:B, 8ffs:A, 5jmn:A, 5jmn:B, 5jmn:C, 5nc5:B, 5ng5:K, 5ng5:L, 5ng5:J, 7ouk:A, 7ouk:B, 7ouk:C, 7oul:A, 7oul:C, 7oum:A, 7oum:B, 7oum:C, 8p1i:A, 8p1i:B, 6q4n:A, 6q4n:B, 6q4n:C, 6q4o:B, 2rdd:A, 1t9u:A, 1t9v:A, 1t9w:A, 1t9x:A, 1t9y:A, 4u8v:B, 4u8y:B, 4u95:B, 2w1b:A, 3w9h:B, 4zjl:D, 4zjo:A, 4zjo:D, 4zjq:A, 4zjq:D, 6zo5:B, 6zo5:C, 6zo6:B, 6zo6:C, 6zo7:A, 6zo7:B, 6zo8:B, 6zo8:C, 6zo9:B, 6zob:A, 6zoc:A, 6zoc:B, 6zod:A, 6zod:B, 6zof:B, 6zog:B, 6zoh:A, 6zoh:B, 6zoh:C
38 5gw7:B 760 112 0.1150 0.0434 0.2946 9.3 5ca3:A, 5ca3:B, 3d3i:A, 3d3i:B, 5gw7:A, 3w7s:A, 3w7s:B, 3w7t:A, 3w7t:B, 3w7u:A, 3w7u:B, 3w7w:A, 3w7w:B, 3w7x:A, 3w7x:B
39 6xux:A 879 112 0.1150 0.0375 0.2946 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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