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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIKFIGGASKVTGSAFLLETGNAKILIDCGIEQEKGIEKDNNEIIEKKINEIGKADICILTHAHLAASGLVPLLVKKRKV
NKIISTPATKELCRLLFNDFQRIQEENNDIPLYSYDDIESSFEIWDEIDDRNTIELFDTKITFYNNSHIIGSVSVFIETH
NGNYLFSGDIGSKLQQLMDYPPDMPDGNVDYLILESTYSHDSSDRDRLLEIAKTTCENGGKVLIPSFAIGRLQEVLYTFS
NYNFNFPVYIDSPMGSKVTNLIKEYNIYLKKKLRRLSITDDLFNNKYIAINTSNQSKELSNSKEPAVIISASGMLEGGRI
LNHLEQIKNDENSTLIFVGYQAQNTRGRKILDGEEKVRCRIEKLNSFSAHADQDELIDYIERLKYTPYKVFLVHGEKEQR
EILAKRIISKKIRVELPENYEILIEKKVVLNINTDNMCNFASYRLMPFSGFIVEKDDRIEINDKNWFDMIWNEEYMALPD
MSHDKIIENIEYLFNIKILSKNRIKEFWEEFCKGQKAAIKYITQVHRKNPNTGRRNWNPPEGDFTDNEIEKLYETAYNTL
LSLIKYDKNKVYNILINFNPKL

The query sequence (length=582) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8z99:H 582 582 1.0000 1.0000 1.0000 0.0 8yhd:I, 8yhd:L, 8yhe:I, 8yhe:L, 8z4j:H, 8z4j:I, 8z4j:L, 8z4l:H, 8z4l:I, 8z4l:L, 8z99:I, 8z99:L, 8z9c:H, 8z9c:I, 8z9c:L, 8z9e:I, 8z9e:L
2 8z9e:H 553 582 0.9502 1.0000 0.9502 0.0
3 8yhe:H 524 582 0.8900 0.9885 0.8900 0.0 8yhd:H
4 8z99:K 372 228 0.3488 0.5457 0.8904 9.86e-138 8yhd:K, 8yhe:K, 8z4j:K, 8z4l:K, 8z9c:K, 8z9e:K
5 8z99:K 372 197 0.2629 0.4113 0.7766 4.55e-84 8yhd:K, 8yhe:K, 8z4j:K, 8z4l:K, 8z9c:K, 8z9e:K
6 3a4y:A 431 413 0.2268 0.3063 0.3196 1.65e-57 3a4y:B, 3a4y:C, 3a4y:D, 2dkf:A, 2dkf:B, 2dkf:C, 2dkf:D, 3idz:A, 3idz:B, 3idz:C, 3idz:D, 3ie0:A, 3ie0:B, 3ie0:C, 3ie0:D, 3ie1:A, 3ie1:B, 3ie1:C, 3ie1:D, 3ie2:A, 3ie2:B, 3ie2:C, 3ie2:D, 3iek:A, 3iek:B, 3iek:C, 3iek:D, 3iel:A, 3iel:B, 3iel:C, 3iel:D, 3iem:A, 3iem:B, 3iem:D, 3iem:C
7 3af5:A 638 447 0.2337 0.2132 0.3043 8.30e-54 3af6:A
8 2xr1:B 611 439 0.2268 0.2160 0.3007 3.32e-51 2xr1:A
9 9bct:M 648 437 0.2251 0.2022 0.2998 2.85e-49 9bct:J, 9bcu:J, 9bcu:M
10 2ycb:B 635 458 0.2234 0.2047 0.2838 5.85e-47 2ycb:A
11 6q55:A 461 433 0.2079 0.2625 0.2794 1.77e-38 6q5a:A
12 6v4x:H 499 477 0.2216 0.2585 0.2704 1.99e-38 6m8q:A, 6m8q:B
13 7ycx:K 590 449 0.2045 0.2017 0.2650 2.04e-35 7cun:K, 8r22:C, 8r23:C, 8r2d:C, 8rc4:k, 8uib:K
14 2i7v:A 433 444 0.2096 0.2818 0.2748 4.05e-35 8t1q:A, 8t1r:A
15 6i1d:A 458 439 0.1856 0.2358 0.2460 4.23e-33
16 2i7t:A 404 443 0.1959 0.2822 0.2573 8.57e-32
17 7sn8:K 588 508 0.2234 0.2211 0.2559 3.16e-30 8uic:K
18 8rbx:k 552 439 0.1821 0.1920 0.2415 6.22e-25 7pks:k, 8rbz:k
19 6v4x:I 510 465 0.1564 0.1784 0.1957 3.00e-06
20 5a0t:A 454 320 0.1168 0.1498 0.2125 0.009 5a0t:B, 5a0v:A, 5a0v:B
21 5hab:B 463 385 0.1512 0.1901 0.2286 0.048 5haa:A, 5haa:B, 5hab:A, 6llb:A, 6llb:B, 5ws2:A, 5ws2:B
22 6z1p:Bw 662 177 0.0704 0.0619 0.2316 0.069
23 7wnu:B 554 259 0.0979 0.1029 0.2201 0.13 7wnt:A, 7wnu:A
24 2zwr:B 207 196 0.0739 0.2077 0.2194 0.21 2zwr:A, 2zzi:A, 2zzi:B
25 5ods:A 572 115 0.0498 0.0507 0.2522 0.86 7bn1:A, 7bn1:B, 7bn2:AAA, 7bn2:BBB, 9c0y:A, 9c0z:A, 1c9i:A, 1c9i:B, 1c9l:A, 1c9l:B, 6e4l:A, 4g55:A, 3gd1:I, 5m5r:A, 5m5s:A, 5m5s:B, 5m5t:A, 5m5t:B, 5m5u:A, 5m5u:B, 5m5v:A, 5m5v:B, 5m61:A, 5m61:B, 5ods:B, 5ods:C, 5ods:D, 6qnn:A, 6qnp:A, 6qnp:B, 6qnp:C, 6qnp:D, 1utc:A, 1utc:B, 2xzg:A, 7zx4:A, 7zx4:B
26 3i9f:B 169 44 0.0206 0.0710 0.2727 1.4 3i9f:A
27 5ngg:A 274 150 0.0567 0.1204 0.2200 1.8 2gmn:A, 2gmn:B, 3lvz:A, 3lvz:B, 5ngg:B, 5njw:A, 5njw:B, 5wcm:A, 5wcm:B
28 7sn8:I 634 138 0.0533 0.0489 0.2246 1.9
29 6k6w:C 444 502 0.1873 0.2455 0.2171 2.4 6k6w:A, 6k6w:B, 6k6w:D
30 7u2r:A 244 77 0.0430 0.1025 0.3247 3.5
31 7jsa:J 88 29 0.0189 0.1250 0.3793 3.6 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
32 8b1n:B 410 246 0.0911 0.1293 0.2154 5.0
33 2dc1:A 236 62 0.0326 0.0805 0.3065 5.6 2dc1:B
34 2p8u:A 462 102 0.0481 0.0606 0.2745 8.7 2p8u:B
35 3ven:A 571 63 0.0275 0.0280 0.2540 9.4 3veo:A, 3ver:A, 3ves:A, 3vet:A, 3vew:A, 3vex:A, 3vez:A, 3vf2:A, 3vf4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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