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BioLiP
>protein
MIKEMIEDFISKGGLIFTHSGRYTNTNNSCFIFNKNDIGVDTKVDMYTPKSAGIKNEEGENLWQVLNKANMFYRIYSGEL
GEELQYLLKSCCTAKEDVTTLPQIYFKNGEGYDILVPIGNAHNLISGTEYLWEHKYYNTFTQKLGGSNPQNCTHACNKMR
GGFKQFNCTPPQVEDNYNA

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7wwv:A 179 179 1.0000 1.0000 1.0000 3.55e-135 8k0k:A, 8k22:B, 8k23:B, 8k23:b, 8k24:b, 8k24:B, 8k27:A, 8k28:A, 8k29:A
2 6w1x:A 314 120 0.1788 0.1019 0.2667 0.004
3 7jzw:A 427 94 0.1453 0.0609 0.2766 0.015 6b44:A, 6b45:A, 6b47:A, 6b48:A, 7ecv:A, 7ecw:A, 7elm:A, 7elm:K, 7eln:A, 7eln:X, 7eqg:B, 7jzx:A, 7jzy:A, 7jzz:A, 6ne0:A, 7t3j:A, 7t3k:A, 7t3k:a, 7t3l:A, 7t3l:a, 7taw:A, 7taw:a, 7tax:A, 5uz9:A, 6vqv:C, 6vqw:B, 6vqx:B, 7we6:A, 7we6:X, 6whi:A, 7yhs:A
4 8rt6:B 246 29 0.0726 0.0528 0.4483 1.4 7o3j:B, 7o3j:E, 7o3j:H, 7o3j:K, 7o3j:N, 7o3j:Q, 7o3j:T, 7o3j:W, 7o3j:Z, 7o3j:c, 7o3j:f, 7o3j:i, 7o3j:l, 7o3j:o, 7o3t:B, 7o3t:z, 7o3t:E, 7o3t:H, 7o3t:K, 7o3t:N, 7o3t:Q, 7o3t:T, 7o3t:v, 7o3t:W, 7o3t:Z, 7o3t:c, 7o3t:f, 7o3t:i, 7o3t:l, 7o3t:o, 8rt4:B, 8rt4:E, 8rt4:H, 8rt4:K, 8rt4:N, 8rt4:Q, 8rt4:T, 8rt4:W, 8rt4:Z, 8rt4:c, 8rt4:f, 8rt4:i, 8rt4:l, 8rt4:o, 8rt5:B, 8rt5:z, 8rt5:E, 8rt5:H, 8rt5:K, 8rt5:N, 8rt5:Q, 8rt5:T, 8rt5:v, 8rt5:W, 8rt5:Z, 8rt5:c, 8rt5:f, 8rt5:i, 8rt5:l, 8rt5:o, 8rt6:E, 8rt6:H, 8rt6:K, 8rt6:N, 8rt6:Q, 8rt6:T, 8rt6:W, 8rt6:Z, 8rt6:c, 8rt6:f, 8rt6:i, 8rt6:l, 8rt6:o, 8rt6:v, 8rt6:z, 8rt7:B, 8rt7:E, 8rt7:H, 8rt7:K, 8rt7:N, 8rt7:Q, 8rt7:T, 8rt7:W, 8rt7:Z, 8rt7:c, 8rt7:f, 8rt7:i, 8rt7:l, 8rt7:o, 8rt7:v, 8rt7:z, 8rt8:B, 8rt8:E, 8rt8:H, 8rt8:K, 8rt8:N, 8rt8:Q, 8rt8:T, 8rt8:W, 8rt8:Z, 8rt8:c, 8rt8:f, 8rt8:i, 8rt8:l, 8rt8:o, 8rt8:v, 8rt8:z
5 3ug4:C 484 76 0.1229 0.0455 0.2895 1.6 3ug4:A, 3ug4:B, 3ug4:D, 3ug4:E, 3ug4:F, 3ug5:A, 3ug5:B, 3ug5:C, 3ug5:D, 3ug5:E, 3ug5:F
6 3vdd:A 280 45 0.0782 0.0500 0.3111 2.3 8ay4:A, 3dpr:A, 1fpn:1, 1v9u:1
7 4yla:A 374 33 0.0559 0.0267 0.3030 2.8
8 3vss:A 494 31 0.0782 0.0283 0.4516 5.9
9 6is5:B 304 55 0.0894 0.0526 0.2909 9.1 6is5:A, 6is5:C, 6is5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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