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BioLiP
>protein
MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEIAGRVEVDYKGNKLCLLKEIA
KIIKGKN

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1l9a:A 87 87 1.0000 1.0000 1.0000 3.21e-57 1lng:A, 3ndb:A, 2v3c:A, 2v3c:B, 4xco:A, 4xco:B
2 1jid:A 114 83 0.3103 0.2368 0.3253 1.04e-08 6frk:q, 2go5:B, 2j37:B, 3jaj:9, 3jan:9, 3ktv:B, 3ktv:D, 5m73:B, 5m73:F, 1mfq:B, 7nfx:q, 7obq:q, 7obr:q, 4p3e:B, 7qwq:q, 6r6g:AC, 1ry1:B
3 3ktw:B 93 58 0.2299 0.2151 0.3448 6.51e-04 3ktw:A
4 4v7e:Cb 58 26 0.1149 0.1724 0.3846 0.062
5 2yqz:A 261 44 0.1839 0.0613 0.3636 0.15 2yqz:B
6 2ajq:A 704 74 0.2759 0.0341 0.3243 0.77 2ajq:F, 6n7w:H, 6p7e:A, 6p7e:B, 1t8e:A, 1tk0:A, 1tk8:A, 1tkd:A
7 1sks:A 681 64 0.2299 0.0294 0.3125 1.3 1skr:A, 1skw:A, 1sl1:A, 1sl2:A, 1t7p:A, 1tk5:A, 1x9m:A, 1x9s:A, 1x9w:A, 1zyq:A
8 8gl8:I 624 39 0.1724 0.0240 0.3846 2.6
9 8azw:O 49 16 0.0920 0.1633 0.5000 3.2 8b2l:O3, 7qiw:d, 7qiz:d
10 1tpy:A 285 24 0.1149 0.0351 0.4167 3.3
11 6p7e:C 672 49 0.2069 0.0268 0.3673 4.2 1sl0:A, 1sl0:C
12 6n9u:H 645 49 0.2069 0.0279 0.3673 4.3 6n9v:H, 6n9w:H, 6n9x:H, 6p7e:D
13 8a1z:A 396 35 0.1494 0.0328 0.3714 4.9 8a21:A, 5is2:A, 5it0:A, 5it4:A, 5jjb:A, 5jlp:A, 5jlr:A, 5jma:A, 3p96:A, 5t41:A
14 7jil:D 206 27 0.1379 0.0583 0.4444 5.1
15 1skq:A 416 42 0.1609 0.0337 0.3333 5.2 1jny:A, 1jny:B, 1skq:B
16 6dio:C 428 75 0.2299 0.0467 0.2667 5.5 6dio:A, 6dio:B, 6eev:A
17 6pdq:D 142 19 0.1034 0.0634 0.4737 5.8 6pdq:A
18 7t30:A 666 46 0.1724 0.0225 0.3261 5.9 7t2r:A, 7t2r:F, 7t30:F
19 6y66:GGG 268 30 0.1149 0.0373 0.3333 6.0 6y66:AAA, 6y66:BBB, 6y66:CCC, 6y66:DDD, 6y66:EEE, 6y66:FFF, 6y66:HHH, 6y66:III, 6y66:JJJ
20 3bpt:A 362 30 0.1379 0.0331 0.4000 6.4
21 5ixj:D 394 57 0.2414 0.0533 0.3684 8.6 6am8:A, 6am8:B, 6am8:C, 6am8:D, 6am9:A, 6am9:B, 6am9:C, 6am9:D, 6amh:A, 6amh:B, 6amh:C, 6amh:D, 6ami:A, 6ami:B, 6ami:C, 6ami:D, 6cut:A, 6cut:B, 6cut:C, 6cut:D, 6cuz:A, 6cuz:D, 5dw0:A, 5dw0:B, 5dw0:C, 5dw0:D, 5dw3:A, 5dw3:B, 5dw3:C, 5dw3:D, 5ixj:A, 5ixj:B, 5ixj:C, 7rnp:A, 7rnp:B, 7rof:A, 7rof:D, 5t6m:A, 5t6m:B, 5t6m:C, 5t6m:D, 1v8z:A, 1v8z:B, 1v8z:C, 1v8z:D, 5vm5:A, 5vm5:B, 5vm5:C, 5vm5:D, 1wdw:B, 1wdw:D, 1wdw:F, 1wdw:H, 1wdw:J, 1wdw:L
22 3s55:D 275 19 0.1034 0.0327 0.4737 9.7 3s55:A, 3s55:B, 3s55:C, 3s55:E, 3s55:F, 3s55:G, 3s55:H
23 6slf:A 398 26 0.1379 0.0302 0.4615 9.7 6slf:B, 6slf:C, 6slf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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