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BioLiP
>protein
MIITVQYKNGDSTSSVTAIYPIFKITNNGDTSVKLSDIIIRYYYTKEGNENETFWCNEFTRDGSQVYGTFVKMSKPKENA
DHYLEIGFYDKAGSLKPGESVELKVGFAKNGWTKYNQFNDYSYNRVNNRFINWDHITVYLSGKLVYGKEP

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6sl4:A 150 150 1.0000 1.0000 1.0000 4.47e-110 6sl4:B, 6sl4:C
2 4jo5:A 170 157 0.4533 0.4000 0.4331 1.61e-41 4b9f:A, 4b9f:B, 1nbc:A, 1nbc:B
3 3zqw:A 153 150 0.4000 0.3922 0.4000 5.08e-40 3zu8:A, 3zuc:A
4 1g43:A 160 157 0.3867 0.3625 0.3694 1.02e-37
5 4b9p:A 166 160 0.4400 0.3976 0.4125 3.98e-34
6 4b97:A 151 148 0.3867 0.3841 0.3919 1.07e-33
7 6d5b:B 154 149 0.3733 0.3636 0.3758 2.79e-29 6d5b:A, 6d5b:C, 6d5b:D, 6d5b:E, 6d5b:F, 6d5b:G, 6d5b:H, 6d5b:I, 6d5b:J, 6d5b:K, 6d5b:L
8 2wo4:A 159 148 0.3733 0.3522 0.3784 1.10e-22 2wnx:A, 2wob:A, 2wob:C, 2wob:E
9 4b9c:A 150 130 0.3267 0.3267 0.3769 6.50e-21
10 4b96:A 151 151 0.3000 0.2980 0.2980 5.27e-17
11 3zqx:A 146 153 0.3333 0.3425 0.3268 6.09e-16
12 8u49:A 615 89 0.1733 0.0423 0.2921 0.011 8u4a:A, 8u4f:A
13 2xfg:B 172 39 0.1067 0.0930 0.4103 0.12
14 7aih:Q 217 71 0.1000 0.0691 0.2113 1.8 7am2:Q, 7ane:Q
15 5gan:A 2196 44 0.1000 0.0068 0.3409 3.1 5gam:A, 5mps:A, 5mq0:A
16 4tmc:A 399 55 0.1133 0.0426 0.3091 4.9 4tmb:A, 4tmb:B, 4tmb:C, 4tmb:D, 4tmc:B, 4tmc:C, 4tmc:D
17 3mx2:B 517 124 0.1800 0.0522 0.2177 5.7 4fvu:A, 4g9z:A, 4gv3:A, 4gv6:A, 4gv9:A, 3mwp:A, 3mwp:B, 3mwp:C, 3mwt:A, 3mwt:B, 3mwt:C, 3mx2:A, 3mx2:C, 3mx5:A, 3mx5:B, 3mx5:C, 3q7b:A, 3q7c:A, 3r3l:A, 3r3l:B, 3r3l:C, 3t5q:A, 7v37:A, 7v37:B, 7v38:A, 7v38:B, 7v39:A, 7v39:B, 7v3a:A, 7v3a:B, 7v3b:A, 7v3b:B, 7v3c:A, 7v3c:B
18 5t2n:A 291 37 0.0800 0.0412 0.3243 8.5
19 5odp:G 100 60 0.1200 0.1800 0.3000 9.2 5odp:A
20 3t5n:A 282 120 0.1733 0.0922 0.2167 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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