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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6l8e:A 83 83 1.0000 1.0000 1.0000 3.36e-56 6l8e:B, 6l8e:C, 6l8e:D, 6l8e:I, 6l8e:J, 6l8e:K, 6l8e:L
2 7v6w:B 85 56 0.2048 0.2000 0.3036 0.001 7v6w:C, 7v6w:A, 7v6w:I, 7v6w:D, 7v6w:L, 7v6w:J, 7v6w:K
3 1ji4:A 144 34 0.1446 0.0833 0.3529 1.1 4evb:A, 4evc:A, 1ji4:D, 1ji4:B, 1ji4:C, 1ji4:E, 1ji4:H, 1ji4:F, 1ji4:G, 1ji4:I, 1ji4:L, 1ji4:J, 1ji4:K
4 8c93:S 98 35 0.1205 0.1020 0.2857 1.8 9cl9:S
5 3ig4:A 419 29 0.1325 0.0263 0.3793 1.9 3ig4:B, 3ig4:C, 3ig4:D, 3ig4:E, 3ig4:F
6 8a3l:r 110 35 0.1205 0.0909 0.2857 2.0 7abz:S, 7ac7:S, 7acj:S, 7acr:S, 5ady:S, 5afi:S, 5aka:S, 8akn:r, 8am9:r, 8ana:r, 8ap4:r, 9ax7:r, 9ax8:S, 8aye:r, 8b0x:r, 7b5k:S, 8b7y:a, 3bbx:S, 8bf7:P, 8bge:P, 8bgh:P, 8bh4:P, 8bhj:P, 8bhl:P, 8bhn:P, 8bhp:P, 8bil:P, 8bim:P, 7bl2:S, 7bl3:S, 7bl4:S, 7bl5:S, 7bl6:S, 6bu8:21, 7bv8:T, 6by1:CS, 6by1:DS, 6c4i:T, 8c8x:S, 8c8y:S, 8c8z:S, 8c90:S, 8c91:S, 8c92:S, 8c94:S, 8c95:S, 8c96:S, 8c97:S, 8c98:S, 8c99:S, 8c9a:S, 8c9b:S, 8c9c:S, 8cam:r, 8ceu:r, 8cgd:r, 8cgk:r, 8cgv:r, 9cg5:r, 9cg6:r, 9cg7:r, 7cpj:S, 4csu:S, 7d6z:S, 7d80:r, 6dnc:W, 8e30:P, 8e32:P, 8e33:P, 8e35:P, 8e36:P, 8e3l:P, 8e3m:P, 8e3o:P, 8e41:P, 8e42:P, 8e43:P, 8e44:P, 8e45:P, 8e46:P, 8e47:P, 8e48:P, 8e49:P, 8eiu:r, 8ekc:U, 8emm:r, 6enf:S, 6enj:S, 6enu:S, 9fbv:r, 8fiz:BZ, 8fto:r, 8fzd:U, 8fze:U, 8fzf:U, 8fzg:U, 8fzh:U, 8fzi:U, 8fzj:U, 8g2u:S, 8g31:S, 8g34:S, 8g38:S, 8g6w:r, 8g6x:r, 8g6y:r, 8g7p:U, 8g7q:U, 8g7r:U, 8g7s:U, 5gad:T, 5gae:T, 5gaf:T, 5gag:T, 5gah:T, 6gbz:S, 6gc0:S, 6gc4:S, 6gc6:S, 6gc7:S, 6gc8:S, 6gwt:S, 6gxm:S, 6gxn:S, 6gxo:S, 6gxp:S, 6h4n:S, 5h5u:T, 6h58:S, 6h58:SS, 6hrm:S, 8hsp:r, 8htz:r, 8hu1:r, 6i0y:S, 6i7v:DT, 6i7v:CT, 8ifb:r, 8ifc:r, 5iqr:S, 5it8:CT, 5it8:DT, 8j1z:r, 2j28:S, 3j5l:S, 5j5b:CT, 5j5b:DT, 3j7z:S, 5j7l:CT, 5j7l:DT, 3j8g:S, 5j88:CT, 5j88:DT, 5j8a:CT, 5j8a:DT, 3j9y:S, 3j9z:LQ, 5j91:CT, 5j91:DT, 3ja1:LU, 3jbu:s, 3jbv:s, 3jcd:S, 3jce:S, 3jcj:R, 3jcn:S, 5jc9:CT, 5jc9:DT, 7jss:s, 7jsw:s, 7jsz:s, 5jte:BS, 7jt1:s, 7jt2:s, 7jt3:s, 5ju8:BS, 7k00:r, 7k50:s, 7k51:s, 7k52:s, 7k53:s, 7k54:s, 7k55:s, 5kcr:1W, 5kcs:1W, 5kps:S, 5kpv:R, 5kpw:R, 5kpx:R, 5l3p:W, 6lkq:a, 7lv0:s, 7lvk:a, 5lza:S, 5lzb:S, 5lzc:S, 5lzd:S, 5lze:S, 5lzf:S, 7m5d:S, 5mdv:S, 5mdw:S, 5mdy:S, 5mdz:S, 5mgp:S, 7n1p:LV, 7n2c:LV, 7n2u:LV, 7n2v:LV, 7n30:LV, 7n31:LV, 7nbu:r, 5nco:T, 5np6:q, 7nso:S, 7nsp:S, 7nsq:S, 5nwy:f, 7nwt:S, 7nww:R, 7o19:BS, 7o1a:BS, 7o1c:BS, 5o2r:S, 6o9j:S, 6o9k:S, 7ode:a, 6ofx:s, 6og7:s, 6ogf:s, 6ogg:s, 6ogi:s, 7oif:R, 7oig:R, 7oii:R, 7oiz:r, 7oj0:r, 6om6:S, 6ore:S, 6orl:S, 6osk:S, 6osq:S, 6ost:S, 6ot3:S, 7ot5:R, 7otc:S, 6ouo:S, 8p16:S, 8p17:S, 8p18:S, 7p3k:r, 8peg:v, 8phj:r, 6pj6:a, 7pjs:S, 7pjt:S, 7pju:S, 7pjv:S, 7pjw:S, 7pjx:S, 7pjy:S, 7pjz:S, 8pkl:v, 8pva:r, 7q4k:BS, 6q97:S, 6q98:S, 6q9a:S, 8qbt:S, 6qdw:s, 7qg8:f, 7qgh:f, 7qgn:f, 7qgr:f, 8qk7:S, 8qoa:r, 7qq3:a, 6qul:T, 8r6c:r, 8r8m:r, 8rpy:S, 8rpz:S, 8rq0:S, 8rq2:S, 6s0k:T, 7s1g:a, 7s1h:a, 7s1i:a, 7s1j:a, 7s1k:a, 7sa4:S, 7ss9:s, 7ssd:s, 7ssl:s, 7ssn:s, 7sso:s, 7ssw:s, 7st2:s, 7st6:s, 7st7:s, 8syl:U, 6szs:S, 8t5d:S, 8t5h:S, 6tbv:L221, 6tc3:L221, 7tos:L22, 4u1u:BS, 4u1u:DS, 4u1v:BS, 4u1v:DS, 4u20:BS, 4u20:DS, 4u24:BS, 4u24:DS, 4u25:BS, 4u25:DS, 4u26:BS, 4u26:DS, 4u27:BS, 4u27:DS, 5u4i:T, 6u48:CT, 5u9f:21, 5u9g:21, 7ug7:LV, 7uph:r, 8upo:1, 8upr:1, 8uql:1, 8uqm:1, 8uqp:1, 8ur0:1, 8urh:1, 8uri:1, 8urx:1, 8ury:1, 4uy8:S, 5uyk:21, 5uyl:21, 5uym:21, 5uyn:21, 5uyp:21, 5uyq:21, 4v4h:BS, 4v4h:DS, 4v4q:BS, 4v4q:DS, 4v4v:BQ, 4v4w:BQ, 4v50:BS, 4v50:DS, 4v52:BS, 4v52:DS, 4v53:BS, 4v53:DS, 4v54:BS, 4v54:DS, 4v55:BS, 4v55:DS, 4v56:BS, 4v56:DS, 4v57:BS, 4v57:DS, 4v5b:AS, 4v5b:CS, 4v5h:BS, 4v5y:BS, 4v5y:DS, 4v64:BS, 4v64:DS, 4v65:BL, 4v66:BL, 4v69:BS, 4v6c:BS, 4v6c:DS, 4v6d:BS, 4v6d:DS, 4v6e:BS, 4v6e:DS, 4v6k:AT, 4v6l:BT, 4v6m:BS, 4v6n:AU, 4v6o:BU, 4v6p:BU, 4v6q:BU, 4v6r:BU, 4v6s:AU, 4v6t:BS, 4v6v:BW, 4v6y:BS, 4v6z:BS, 4v70:BS, 4v71:BS, 4v72:BS, 4v73:BS, 4v74:BS, 4v75:BS, 4v76:BS, 4v77:BS, 4v78:BS, 4v79:BS, 4v7a:BS, 4v7b:BS, 4v7c:BU, 4v7d:AV, 4v7i:AS, 4v7s:BS, 4v7s:DS, 4v7t:BS, 4v7t:DS, 4v7u:BS, 4v7u:DS, 4v7v:BS, 4v7v:DS, 4v85:BW, 4v89:BW, 4v9c:BS, 4v9c:DS, 4v9d:CS, 4v9d:DS, 4v9o:AS, 4v9o:CS, 4v9o:ES, 4v9o:GS, 4v9p:AS, 4v9p:CS, 4v9p:ES, 4v9p:GS, 8vs9:L22, 8vsa:L22, 6vu3:1, 6vwl:Q, 6vwm:Q, 6vwn:Q, 6vyq:1, 6vyr:1, 6vys:1, 6vyt:1, 6vyu:1, 6vyw:1, 6vyx:1, 6vyy:1, 6vyz:1, 6vz2:1, 6vz3:1, 6vz5:1, 6vz7:1, 6vzj:1, 8w51:T, 5wdt:S, 6wd0:s, 6wd1:s, 6wd2:s, 6wd3:s, 6wd4:s, 6wd5:s, 6wd6:s, 6wd7:s, 6wd8:s, 6wd9:s, 6wda:s, 6wdb:s, 6wdc:s, 6wdd:s, 6wde:s, 6wdf:s, 6wdg:s, 6wdh:s, 6wdi:s, 6wdj:s, 6wdk:s, 6wdl:s, 6wdm:s, 5we4:S, 5we6:S, 4wf1:BS, 4wf1:DS, 5wf0:S, 5wfk:S, 5wfs:S, 6wnt:s, 6wnv:s, 6wnw:s, 4woi:BS, 4woi:CS, 4www:RS, 4www:YS, 6x6t:1, 6x7f:1, 6x7k:1, 6x9q:1, 6xdq:1, 6xdr:1, 6xgf:1, 6xii:1, 6xij:1, 6xz7:S, 6xza:S2, 6xzb:S2, 6y69:S, 7y7c:r, 7y7d:r, 7y7e:r, 7y7f:r, 7y7g:r, 7y7h:r, 4ybb:CT, 4ybb:DT, 7yla:a, 6ys3:s, 6ysr:S, 6yss:S, 6yst:S, 6ysu:S, 7z20:s, 7zod:s, 7zp8:s, 7zq5:s, 7zq6:s, 6ztj:BT, 6ztl:BT, 6ztm:BT, 6ztn:BT, 6zto:BT, 6ztp:BT, 7zta:L221, 6zu1:BT
7 8qmf:A 678 31 0.1325 0.0162 0.3548 2.3 8qmf:B
8 5ufc:A 240 58 0.1807 0.0625 0.2586 2.4 5ufc:B, 5ufc:C
9 7u6l:D 436 21 0.1446 0.0275 0.5714 2.9 7e7h:A, 7e7h:B, 7u6l:A, 7u6l:B, 7u6l:C
10 2ix1:A 643 58 0.1566 0.0202 0.2241 5.9 2id0:A, 2id0:B, 2id0:C, 2id0:D, 2ix0:A
11 6qh4:C 138 32 0.1325 0.0797 0.3438 6.1 6qh4:A, 6qh4:B, 6qh4:D, 3rmu:A, 3rmu:B, 3rmu:C, 3rmu:D
12 8std:E 217 44 0.1566 0.0599 0.2955 9.7 7mj0:A, 7mj1:C, 7mj1:E, 7mj2:A, 7mj2:D, 8soq:A, 8soq:B, 8soq:C, 8soq:D, 8soq:E, 8stc:D, 8std:A, 8std:B, 8std:C, 8std:D, 8std:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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