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BioLiP
>protein
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYL

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6l8e:A 83 54 1.0000 0.6506 1.0000 9.34e-33 6l8e:B, 6l8e:C, 6l8e:D, 6l8e:I, 6l8e:J, 6l8e:K, 6l8e:L
2 7v6w:B 85 55 0.3148 0.2000 0.3091 6.54e-04 7v6w:C, 7v6w:A, 7v6w:I, 7v6w:D, 7v6w:L, 7v6w:J, 7v6w:K
3 1ji4:A 144 34 0.2222 0.0833 0.3529 0.34 4evb:A, 4evc:A, 1ji4:D, 1ji4:B, 1ji4:C, 1ji4:E, 1ji4:H, 1ji4:F, 1ji4:G, 1ji4:I, 1ji4:L, 1ji4:J, 1ji4:K
4 7u6l:D 436 21 0.2222 0.0275 0.5714 0.99 7e7h:A, 7e7h:B, 7u6l:A, 7u6l:B, 7u6l:C
5 3ig4:A 419 26 0.2037 0.0263 0.4231 2.2 3ig4:B, 3ig4:C, 3ig4:D, 3ig4:E, 3ig4:F
6 7ykk:E 735 43 0.2963 0.0218 0.3721 7.7 7nku:A, 7nku:F, 7nku:B, 7nku:C, 7nku:D, 7nku:E, 7wbb:A, 7wbb:B, 7wbb:D, 7wbb:E, 7wbb:C, 7wd3:A, 7wd3:B, 7wd3:C, 7wd3:D, 7wd3:E, 7wd3:F, 7ykk:D, 7ykk:F, 7ykk:A, 7ykk:B, 7ykk:C, 7ykl:F, 7ykl:A, 7ykl:B, 7ykl:C, 7ykl:D, 7ykl:E, 7ykt:F, 7ykt:A, 7ykt:B, 7ykt:C, 7ykt:D, 7ykt:E, 7ykz:D, 7ykz:C, 7ykz:F, 7ykz:B, 7ykz:E, 7ykz:A, 7z11:A, 7z11:B, 7z11:C, 7z11:D, 7z11:F, 7z11:E, 7z34:w, 7z34:m, 7z34:n, 7z34:t, 7z34:Aa, 7z34:x

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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