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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MIIIGGSATNGIDESLSKILSIPLVKVENKIFPDGESYIRVPSSIRDEEVLLVQTTDYPQDKHLIELFLIAETIRDLGAK
KLTAIVPYLAYSRQDRRFKDGEAISIKTILHILSEVGVNTLVVVEPHKPEELSYFKGELKIVHPYHQIARKIKEIIEDPF
ILAPDRGALDRARKIAEEINAPYSYIEKERNINLKGKDVVIIDDIISTGGTIVQATRLAYSLGAKSVTAAAIHLLLVGGA
KERLREVGVKTLIGTNTINVNDKDIITIDVSQSIALSL

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4twb:A 278 278 1.0000 1.0000 1.0000 0.0 4twb:B, 4twb:C, 4twb:D, 4twb:E, 4twb:F
2 1u9z:A 274 258 0.3525 0.3577 0.3798 1.77e-60 1u9z:B, 1u9z:C, 1u9z:D
3 3dah:C 300 264 0.2878 0.2667 0.3030 4.19e-41 3dah:A, 3dah:B
4 1ibs:B 299 255 0.2950 0.2742 0.3216 2.57e-39 1dku:A, 1dku:B, 1ibs:A
5 6nfe:B 299 267 0.2986 0.2776 0.3109 1.14e-37 6nfe:A
6 6asv:C 311 277 0.2842 0.2540 0.2852 1.47e-35 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
7 7pn0:A 312 273 0.2914 0.2596 0.2967 2.15e-35 7pn0:B, 5t3o:A, 5t3o:B, 5t3o:C
8 3mbi:A 287 224 0.2590 0.2509 0.3214 5.55e-35 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
9 8dbe:A 316 292 0.2842 0.2500 0.2705 9.08e-30 8dbc:F, 8dbe:F, 8dbe:B, 8dbe:C, 8dbe:D, 8dbe:E, 8dbf:A, 8dbf:F, 8dbf:B, 8dbf:C, 8dbf:D, 8dbf:E, 8dbf:G, 8dbf:L, 8dbf:H, 8dbf:I, 8dbf:J, 8dbf:K, 8dbg:A, 8dbg:F, 8dbg:C, 8dbg:B, 8dbg:E, 8dbg:D, 8dbh:A, 8dbh:F, 8dbh:B, 8dbh:C, 8dbh:D, 8dbh:E, 8dbh:G, 8dbh:L, 8dbh:H, 8dbh:I, 8dbh:J, 8dbh:K, 8dbi:A, 8dbi:F, 8dbi:C, 8dbi:B, 8dbi:E, 8dbi:D, 8dbj:A, 8dbj:F, 8dbj:C, 8dbj:B, 8dbj:E, 8dbj:D, 8dbj:G, 8dbj:L, 8dbj:I, 8dbj:H, 8dbj:K, 8dbj:J, 8dbk:A, 8dbk:C, 8dbk:F, 8dbk:B, 8dbk:E, 8dbk:D, 8dbl:A, 8dbl:E, 8dbl:B, 8dbl:D, 8dbl:C, 8dbl:F, 8dbm:A, 8dbm:E, 8dbm:B, 8dbm:D, 8dbm:C, 8dbm:F, 8dbm:G, 8dbm:K, 8dbm:H, 8dbm:J, 8dbm:I, 8dbm:L, 8dbn:A, 8dbn:B, 8dbn:C, 8dbn:D, 8dbn:E, 8dbn:F, 8dbo:A, 8dbo:B, 8dbo:F, 8dbo:C, 8dbo:D, 8dbo:E, 2hcr:A, 2hcr:B, 7yk1:A, 7yk1:C, 7yk1:F, 7yk1:B, 7yk1:D, 7yk1:E
10 4rv4:B 211 162 0.1367 0.1801 0.2346 2.20e-04 4rv4:A, 4rv4:C
11 3dez:A 206 87 0.0971 0.1311 0.3103 5.42e-04 3dez:B
12 8izj:B 183 56 0.0719 0.1093 0.3571 0.003 8izj:A, 7y94:A, 7y94:B
13 5znq:A 183 56 0.0755 0.1148 0.3750 0.008 5b6h:A, 5y07:A, 5y07:B, 5zc7:A, 5zc7:B, 5zmi:A, 5znq:B, 5zoc:A
14 3qw4:C 447 66 0.0935 0.0582 0.3939 0.018 3qw4:B
15 5vn4:A 237 85 0.1043 0.1224 0.3412 0.021 5vn4:B
16 1mzv:A 216 73 0.0755 0.0972 0.2877 0.057
17 3ozf:B 234 39 0.0576 0.0684 0.4103 0.19 1cjb:A, 1cjb:B, 1cjb:C, 1cjb:D, 3ozf:A, 3ozf:C, 3ozf:D, 3ozg:A, 3ozg:B, 3ozg:C, 3ozg:D, 7tux:A, 7tux:B, 7tux:C, 7tux:D
18 6fci:A 179 68 0.0683 0.1061 0.2794 0.37 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
19 3acc:A 166 29 0.0396 0.0663 0.3793 0.66 3acd:A
20 5ipf:A 201 38 0.0576 0.0796 0.4211 0.75 5ipf:B, 5ipf:C, 5ipf:D
21 1qb7:A 236 24 0.0432 0.0508 0.5000 0.97 1qb8:A
22 2geb:A 184 25 0.0432 0.0652 0.4800 1.1 1r3u:A, 1r3u:B, 1yfz:A, 1yfz:B
23 4zfn:B 177 42 0.0468 0.0734 0.3095 1.2 5bqp:A, 5bqp:B, 5bqp:C, 5bqp:D, 4z1o:A, 4z1o:B, 4zfn:A
24 1bzy:A 214 57 0.0827 0.1075 0.4035 2.1 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
25 1hgx:A 164 29 0.0432 0.0732 0.4138 2.2
26 5knx:B 176 64 0.0791 0.1250 0.3438 2.3 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
27 1l1q:A 181 66 0.0683 0.1050 0.2879 2.3 1l1r:A
28 8tvy:M 558 51 0.0647 0.0323 0.3529 2.3 5vvr:M
29 7f06:A 181 93 0.0755 0.1160 0.2258 2.5 7f06:B
30 4m0k:C 176 60 0.0719 0.1136 0.3333 2.8 4m0k:A, 4m0k:B, 4m0k:D
31 2vfa:B 205 41 0.0540 0.0732 0.3659 3.0 2vfa:A
32 5brn:B 194 39 0.0540 0.0773 0.3846 3.2 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
33 8guh:A 394 106 0.1007 0.0711 0.2642 4.0 3a2b:A, 8h1q:A, 8h1y:A, 8h20:A, 8h21:A, 8h29:A, 8iyp:A, 8iyt:A
34 8he5:O 516 51 0.0683 0.0368 0.3725 4.2
35 4qyi:B 171 25 0.0360 0.0585 0.4000 5.2 4qyi:A, 4qyi:C, 4qyi:D, 4qyi:E
36 5nly:B 351 57 0.0647 0.0513 0.3158 5.9 6fne:A
37 6lbp:A 460 34 0.0576 0.0348 0.4706 5.9 6lbp:B
38 7p0h:A 411 39 0.0540 0.0365 0.3846 6.0 7p0h:B, 7p0h:C, 7p0h:D
39 6bo7:A 220 39 0.0432 0.0545 0.3077 6.8 6bo7:B, 6bo7:C, 6bo7:D, 6bo7:E, 6bo7:F, 6bo7:G, 6bo7:H, 6bo7:I, 6bo7:J, 6bo7:K, 6bo7:L
40 1i5e:A 208 35 0.0432 0.0577 0.3429 7.2 1i5e:B
41 4rrf:E 140 55 0.0576 0.1143 0.2909 7.3 4rrf:A, 4rrf:B, 4rrf:C, 4rrf:D, 4rrf:F, 4rrg:A, 4rrg:B, 4rrg:C
42 5esw:A 190 40 0.0468 0.0684 0.3250 7.4 5esx:A, 5esx:B
43 6u0o:B 288 45 0.0540 0.0521 0.3333 7.5
44 6bum:B 363 98 0.0935 0.0716 0.2653 8.1 6bum:A, 6bum:C, 6bum:D, 6bun:A, 6bun:B, 6bun:C, 6bun:D, 6buo:A, 6buo:D, 6buo:B, 6buo:C, 6bup:A, 6bup:B, 6bup:C, 6bup:D, 6buq:A, 6buq:D, 6buq:B, 6buq:C, 6bur:A, 6bur:B, 6bur:C, 6bur:D, 6cwj:A, 6cwj:B, 6cwj:C, 6cwj:D
45 6nak:D 165 80 0.0827 0.1394 0.2875 8.1 6n9a:E, 6nak:E, 6s84:E, 6s84:B
46 3kb8:A 201 42 0.0540 0.0746 0.3571 8.8 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
47 1fcv:A 324 49 0.0432 0.0370 0.2449 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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