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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIHLYDAKSFAKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFDKNAQRIVAYKEKSVKAEDGS
VSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGE
PLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDCIVELVKEASR
SNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSVLTIHTS

The query sequence (length=288) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4blt:A 305 288 0.9896 0.9344 0.9896 0.0 4blr:A, 4blr:B, 4blr:C, 4bls:A, 4bls:B, 4bls:C, 4blt:B, 4blt:C, 2vhc:A, 2vhc:C, 2vhc:B, 2vhj:A, 2vhj:B, 2vhj:C, 2vhq:A, 2vhq:B, 2vhq:C, 2vht:A, 2vht:B, 2vht:C, 2vhu:A, 2vhu:B, 2vhu:C, 1w44:A, 1w44:B, 1w44:C, 1w46:A, 1w46:B, 1w46:C, 1w47:A, 1w47:B, 1w47:C, 1w48:A, 1w48:B, 1w48:C, 1w49:A, 1w49:B, 1w49:C, 1w4a:A, 1w4a:B, 1w4a:C, 1w4b:A, 1w4b:B, 1w4b:C
2 6hyp:A 2272 172 0.1424 0.0180 0.2384 0.14
3 6qi8:A 317 94 0.0868 0.0789 0.2660 0.23 7aho:B, 6qi8:B, 6qi9:A, 6qi9:B
4 9ema:A 326 94 0.0868 0.0767 0.2660 0.29 7aho:A, 7aho:C, 2c9o:C, 9ema:B, 9ema:C, 9emc:A, 9emc:B, 9emc:C, 6fo1:A, 6fo1:B, 6fo1:C, 6k0r:A, 6k0r:B, 6k0r:C, 6k0r:G, 6k0r:H, 6k0r:I, 7p6x:A, 7p6x:B, 7p6x:C, 6qi8:C, 6qi9:C, 2xsz:A, 2xsz:B, 2xsz:C
5 2c9o:A 398 94 0.0868 0.0628 0.2660 0.33 2c9o:B
6 7zi4:C 447 94 0.0868 0.0559 0.2660 0.34 9c57:E, 9c57:C, 9c57:A, 9c62:C, 9c62:E, 9c62:A, 6hts:A, 6hts:C, 6hts:E, 5oaf:A, 5oaf:C, 5oaf:E, 8x15:M, 8x15:O, 8x15:Q, 8x19:M, 8x19:O, 8x19:Q, 8x1c:M, 8x1c:O, 8x1c:Q, 8xvg:A, 8xvg:C, 8xvg:E, 8xvt:A, 8xvt:C, 8xvt:E, 7zi4:A, 7zi4:E
7 7ole:C 427 94 0.0868 0.0585 0.2660 0.35 7ole:E
8 6j19:A 261 40 0.0417 0.0460 0.3000 1.0 6jd4:A, 6jd4:B
9 3urm:A 329 58 0.0660 0.0578 0.3276 1.7 3urm:B, 3uug:A, 3uug:B
10 7uac:H 546 59 0.0590 0.0311 0.2881 1.7 7uab:E, 7uab:H, 7uae:A, 7uaf:B, 7uaf:A, 7uaf:C, 7uaf:D, 7uai:E, 7uai:B, 7uai:C, 7uai:D
11 5jcs:s 2003 48 0.0486 0.0070 0.2917 2.6
12 5n6n:C 698 64 0.0590 0.0244 0.2656 2.9 5m4a:A
13 7si6:A 873 55 0.0625 0.0206 0.3273 4.1 7si3:A, 7si7:A
14 4a0f:A 746 189 0.1667 0.0643 0.2540 4.3
15 6cin:B 1169 51 0.0556 0.0137 0.3137 4.4 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
16 7xnt:C 320 144 0.1250 0.1125 0.2500 6.9
17 4a0g:D 709 179 0.1597 0.0649 0.2570 7.3
18 7yfr:B 643 46 0.0521 0.0233 0.3261 7.3 7yfr:D
19 4a0g:C 681 177 0.1597 0.0675 0.2599 7.4
20 7aih:At 165 22 0.0347 0.0606 0.4545 8.0 7am2:At, 7ane:At
21 3sqr:A 539 69 0.0729 0.0390 0.3043 8.3 3v9e:A, 4x4k:A
22 7bv5:A 234 34 0.0417 0.0513 0.3529 9.6 7bv5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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