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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAIENQDNELLT
LEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETS

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cm9:S 142 127 1.0000 0.8944 1.0000 2.30e-91 8d4c:S, 8d4c:O, 8d4d:S, 8d4d:O, 8d4e:S, 8d4f:S, 8d4f:O, 8d4g:S, 8d4g:O, 6d83:S, 6d84:S, 6d84:Q, 8d9r:S, 8d9r:t, 8d9r:u, 8d9r:v, 8d9r:w, 8d9r:x, 8d9s:S, 8d9s:t, 8d9s:u, 8d9s:v, 8d9s:w, 8d9s:x, 8d9t:S, 8d9t:s, 8d9t:t, 8d9t:u, 8d9t:v, 8d9t:w, 8d9u:S, 8d9u:s, 8d9u:t, 8d9u:u, 8d9u:v, 8d9u:w, 8d9v:S, 8d9v:O, 8d9w:e, 8d9w:f, 6dff:S, 7r4h:S, 7ux3:S
2 4p6z:S 147 127 0.7244 0.6259 0.7244 2.47e-71
3 2jkr:S 142 127 0.4646 0.4155 0.4646 1.97e-42 2jkr:I, 2jkt:S, 2jkt:I, 7og1:SSS, 6qh6:S, 6qh7:S
4 2xa7:M 428 126 0.1969 0.0584 0.1984 0.001 5c7z:A, 5fpi:A, 7oiq:AAA, 7oit:AAA, 6qh6:M, 6qh7:M, 8t1o:M, 5wrl:A, 5wrm:A, 6yaf:M
5 7og1:MMM 406 126 0.1969 0.0616 0.1984 0.001 6bnt:A, 2bp5:M, 1bw8:A, 1bxx:A, 3h85:A, 1hes:A, 1i31:A, 7oiq:BBB, 2pr9:A, 5wrk:A
6 7rwa:M 379 125 0.1969 0.0660 0.2000 0.001 7rwa:m
7 2hw5:C 260 30 0.1181 0.0577 0.5000 1.2
8 8d9w:a 322 88 0.1496 0.0590 0.2159 2.3 8d9w:M
9 8tqm:A 843 37 0.0945 0.0142 0.3243 3.1
10 5j62:B 209 61 0.1417 0.0861 0.2951 3.5 5j62:A
11 8kar:A 414 57 0.1496 0.0459 0.3333 6.4 8kao:C, 8kar:B, 8kar:C
12 3flp:A 217 22 0.0709 0.0415 0.4091 7.9 3flp:B, 3flp:C, 3flp:D, 3flp:E, 3flp:F, 3flp:G, 3flp:H, 3flp:I, 3flp:J, 3flp:K, 3flp:L, 3flp:M, 3flp:N, 3flr:A, 3flr:B, 3flt:A, 3flt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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