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BioLiP
>protein
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1b0n:A 103 63 1.0000 0.6117 1.0000 6.41e-41 3zkc:A, 3zkc:B
2 8tac:B 66 55 0.3968 0.3788 0.4545 3.32e-08
3 1y9q:A 178 56 0.3333 0.1180 0.3750 2.44e-05
4 3clc:B 77 52 0.3492 0.2857 0.4231 4.94e-05 3clc:A, 3clc:C, 3clc:D, 4i8t:A, 4ivz:A, 4ivz:B, 4ivz:E, 4ivz:F, 4iwr:A, 4iwr:B, 4iwr:E, 4iwr:F, 3s8q:A, 3s8q:B, 3ufd:A, 3ufd:B, 3ufd:E, 3ufd:F, 4x4b:A, 4x4b:B, 4x4b:C, 4x4b:D, 4x4c:A, 4x4c:B, 4x4c:C, 4x4c:D, 4x4d:A, 4x4d:B, 4x4d:C, 4x4d:D, 4x4e:A, 4x4e:B, 4x4e:C, 4x4e:D, 4x4f:A, 4x4f:B, 4x4f:C, 4x4f:D, 4x4g:A, 4x4g:B, 4x4g:C, 4x4g:D, 4x4h:A, 4x4h:B, 4x4h:C, 4x4h:D, 4x4i:A, 4x4i:B, 4x4i:C, 4x4i:D
5 2or1:L 63 62 0.3175 0.3175 0.3226 4.87e-04 2or1:R, 1per:L, 1per:R, 1rpe:L, 1rpe:R
6 4yg1:A 72 62 0.3016 0.2639 0.3065 0.003 3dnv:B, 3hzi:B, 5k98:B, 5k98:P, 4yg1:B, 4yg1:C, 4yg1:D, 4yg4:A, 4yg4:B, 4yg4:D, 4yg7:B, 4yg7:E, 4yg7:C, 4yg7:G, 4z58:A, 4z59:A, 4z5c:A, 4z5c:B, 4z5d:A, 4z5d:B, 4z5h:A
7 2xiu:A 66 62 0.3175 0.3030 0.3226 0.003
8 3kxa:A 131 38 0.2540 0.1221 0.4211 0.004 3kxa:B, 3kxa:C, 3kxa:D
9 3fym:A 82 66 0.2857 0.2195 0.2727 0.005
10 7z15:I 253 31 0.2381 0.0593 0.4839 0.10 7z15:J, 7z16:I, 7z16:J, 7z18:I, 7z18:J
11 3jxb:C 67 62 0.3016 0.2836 0.3065 0.28 3jxb:D, 3jxc:L, 3jxc:R, 3jxd:L, 3jxd:R, 2r1j:L, 2r1j:R
12 3cro:L 66 55 0.2540 0.2424 0.2909 0.66 3cro:R
13 6fix:B 99 30 0.1746 0.1111 0.3667 0.87 6fix:A, 6fix:D, 6fix:E
14 4r0m:A 637 46 0.2698 0.0267 0.3696 1.3 4r0m:B
15 1ee0:A 376 34 0.2063 0.0346 0.3824 2.4 1ee0:B
16 6jdb:A 290 20 0.1746 0.0379 0.5500 2.5
17 6y5y:D 285 25 0.1905 0.0421 0.4800 2.7 6y5x:A, 6y5x:C, 6y5x:D, 6y5x:E, 6y5x:I, 6y5y:A, 6y5y:B, 6y5y:C, 6y5y:E, 6y5y:F, 6y5y:G, 6y5y:H, 6y5y:I, 6y5y:J
18 6jdc:A 269 28 0.2063 0.0483 0.4643 2.7
19 7d7m:A 285 39 0.2063 0.0456 0.3333 3.2 8gcm:R, 8gcp:R, 8gd9:R, 8gda:R, 8gdb:R, 5yhl:A, 5ywy:A
20 8bo9:A 174 25 0.1111 0.0402 0.2800 4.9 8aq6:A, 8aq6:G, 8aq6:H, 8aqi:A, 8aqi:B, 8aqi:G, 8aqi:H, 8bo9:B, 8bo9:C, 7snt:A, 7snw:A, 7snw:B, 7snw:C
21 7svu:X 165 57 0.2540 0.0970 0.2807 5.6 8bd4:S, 8bd4:R, 8bd4:T, 8bd5:Q, 8ea3:Q, 8ea4:Q, 7oxd:A, 8rdu:C, 8rkt:C
22 7dbs:A 252 16 0.1270 0.0317 0.5000 6.2 6jhu:A
23 4jlz:A 363 31 0.1905 0.0331 0.3871 6.3 4jlx:A, 4jlz:B, 4kb6:A
24 5w8q:A 379 37 0.1746 0.0290 0.2973 6.4 5w8q:B, 5wc4:A, 5wc4:B
25 5ugh:B 365 32 0.1429 0.0247 0.2812 6.9 6fbn:B, 4ktt:A, 4ktt:C, 4ktv:C, 4ndn:C, 7rw5:D
26 1zzi:A 82 15 0.1587 0.1220 0.6667 8.8 7cre:A, 1j5k:A, 1zzi:B, 1zzj:A, 1zzj:B
27 4i6z:B 200 28 0.2063 0.0650 0.4643 9.0 4i76:A
28 4lev:A 369 30 0.1746 0.0298 0.3667 9.5 7c0m:K, 7c0m:k, 6ct9:A, 6cta:A, 6edb:A, 6edc:A, 7ftf:A, 7ftg:A, 7ftg:B, 7fth:A, 7fti:A, 7ftj:A, 7ftk:A, 7ftk:B, 7ftl:A, 7ftm:A, 7ftn:A, 7fto:A, 7ftp:A, 7ftq:A, 7ftr:A, 7fts:A, 7ftt:A, 7ftt:B, 7ftu:A, 7ftv:A, 7ftw:A, 7ftx:A, 7fty:A, 7ftz:A, 7ftz:B, 7fu0:A, 7fu1:A, 7fu2:A, 7fu3:A, 7fu4:A, 7fu5:A, 7fu5:B, 7fu6:A, 7fu7:A, 7fu8:A, 7fu9:A, 7fua:A, 7fub:A, 7fuc:A, 7fud:A, 7fud:B, 7fue:A, 7fuf:A, 7fug:A, 7fuh:A, 7fui:A, 7fuj:A, 7fuk:A, 7ful:A, 7fum:A, 7fun:A, 7fuo:A, 7fup:A, 7fuq:A, 7fur:A, 8imf:B, 8img:A, 8img:B, 4km5:A, 4lev:B, 4lew:B, 4lew:A, 6lrc:B, 6lrc:A, 6lre:B, 6lrk:A, 6lrk:B, 6nao:A, 6nao:B, 6nfg:A, 6nfg:B, 6nfo:A, 6nfo:B, 6o47:A, 4o67:A, 4o67:B, 4o68:A, 4o69:A, 8okx:A, 8ol1:K, 5v8o:A, 5v8o:B, 5vdo:A, 5vdo:B, 5vdp:A, 5vdp:B, 5vdq:A, 5vdq:B, 5vdr:A, 5vdr:B, 5vds:B, 5vdt:A, 5vdt:B, 5vdu:A, 5vdu:B, 5vdv:A, 5vdv:B, 5vdw:A, 5vdw:B, 6y5d:K, 6y5d:L, 6y5e:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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